Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10320 1787 / 0 tRNA synthetase class I (I, L, M and V) family protein (.1) AT5G65090 518 / 3e-167 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT5G04980 405 / 7e-127 DNAse I-like superfamily protein (.1.2) AT2G32010 322 / 2e-95 CVL1 CVP2 like 1 (.1.2) AT3G63240 316 / 5e-94 DNAse I-like superfamily protein (.1) AT5G49030 266 / 1e-72 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT1G05470 256 / 1e-72 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT1G34120 243 / 2e-68 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT2G37440 228 / 2e-65 DNAse I-like superfamily protein (.1.2) AT2G01900 197 / 8e-55 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041706 [exp] 2404 / 0 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041708 [exp] 865 / 0 AT5G65090 469 / 2e-161 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 424 / 2e-132 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 410 / 4e-128 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 395 / 8e-123 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10042619 [exp] 339 / 1e-100 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1) Lus10006904 [exp] 328 / 7e-98 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10025306 [exp] 296 / 5e-90 AT4G10320 249 / 1e-74 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10008934 [exp] 290 / 4e-89 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G033200 [exp] 1964 / 0 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.007G126501 [exp] 1194 / 0 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.005G078000 [exp] 571 / 0 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 569 / 0 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 429 / 6e-135 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 421 / 2e-132 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.005G212700 [exp] 362 / 3e-110 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.002G050000 [exp] 348 / 5e-105 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 327 / 1e-97 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.008G155700 [exp] 327 / 1e-97 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00133 [flax] [poplar] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [flax] [poplar] DALR PF08264 [flax] [poplar] Anticodon_1 Anticodon-binding domain of tRNA ligase CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10024041 pacid=23141572 polypeptide=Lus10024041 locus=Lus10024041.g ID=Lus10024041.BGIv1.0 annot-version=v1.0 ATGGAAGACGTCTGCGAAGGAAAGGACTTTTCCTTCCCGAAGGAGGAGGAAAAAATTCTCGCCTTCTGGTCGCAAATCCAGGCCTTCAAGACTCAATTGT CACGCTCAGAGTCGCTGCCGGAGTACATTTTCTATGACGGTCCTCCCTTTGCTACCGGCCTTCCTCACTACGGCCACATCCTTGCTGGAACTATCAAGGA TATCGTGACCCGGTACCAGACCACGACCGGCCACCACGTCACGCGGCGGTTCGGATGGGATTGCCATGGCTTGCCGGTAGAGAACGAGATTGATAGGAAG CTTGGGATTAAGAGAAGGGAGGAAGTGTTGCAAATGGGGATTGGCAAGTATAATGAGGAGTGTAGGAGCATCGTCACTCGTTATGTTGAGGAGTGGGAGA AGATTATCACGAGAACTGGGCGCTGGATTGATTTCGATGATGGCTATAAAACTATGGACTTGAAGTTTATGGAGAGTGTTTGGTGGGTTTTCGGTCAGCT TTTCGAGAAGGGTCTCGTTTACAAAGGTTTCAAGGTCATGCCGTATAGCACTGGTTGCAAAACTGTACTGTCGAATTTCGAAGCTGGCCAGAATTTTAAG GATGTACCTGATCCTGAAATTATGGTGGCCTTTCCTATTGTTGATGATCTCCATAATGCTGCGTTTGTGGCCTGGACAACTACGCCCTGGACTCTTCCTA GTAATCTTGCACTTTGTGTCAACCCTACCTTTGATTATGTTAAGGTACGCAACAAGTATTCTGGGAAAGTCTATGTGATTGCAGAATGTCTACTGTCCTC CATTCCCACCGAGAAGCCAAAATCAAGTGATTCAAAGACATCAAGTTCAAAGGCGAAGGGTGCCAAGACTGAAAACCCTATGGATTCATATGAATTACTA GAGAAAGTCAAGGGCAAAGAACTTGTGAATAAAAAGTATGTACCACTATTCAATTATTTCCAGGAGTTCTCTGGCACAGCATTCAGAGTTGTCGCTGATA GTTATGTGACATCTGACCGGGGTACTGGAATTGTTCATTGTGCTCCAGCATTTGGAGAGGATGATTACCGTGTTTGCATTGAGAATGAAATAATCAGCAA GGGGGAGAATTTGATTGTTGCGGTTGATGATGATGGGTGCTTTACTGATAGAATTTCTGATTTCTGTGGGCGCTATGTCAAAGATGCGGACAAAGATATT ATCGAGGCAGTGAAGGGAAATGGCAGACTTGTCAAAACTGGAAGCTTTATGCACAGCTACCCATTCTGTTGGAGATCTGACACTCCACTTCTTTATAGAG CTGTTCCAAGCTGGTTTGTTAAAGTGGAAAGTTTGAAAGATCAATTATTGGAAAGCAACAGTCAGACATATTGGGTACCTGGTTATGTGAAGGTTGGGAT TCTTAAGTCCACTCCTTTCTATATGAGAACAGAAGATAAGAGATTCCATAATTGGTTGGAAAATGCAAGAGACTGGGCTATTAGTCGCAGCCGATTTTGG GGTACTCCTCTCCCTGTATGGACCAGTGCAGATGGCGAAGAAATAGTAGTTGTTGATTCTGTCGCTAAACTTGAAAGTCTTTCTGGAGCCAAGGTGTTTG ATCTGCATCGTCACAATATTGATCACATCACAATTCCTTCTAGTCGTGGCCCTGAATTTGGGGTGCTTCGACGCGTTGATGATGTCTTTGATTGTTGGTT TGAGAGCGGGTCGATGCCTTATGCGTACATCCATTATCCTTTTGAGAATGTTGAGTTGTTTGAGAAGAATTTTCCTGGGCATTTTGTGGCTGAAGGATTA GATCAAACTCGTGGATGGTTCTATACTCTCATGGTGTTGTCAACTGCATTATTTGGAAAGCCGGCATTTAGGAATCTTGTATGCAATGGGCTGGTCTTAG CCGAGGATGGTAAAAAGATGAGTAAAAAGTTGAGAAACTACCCATCACCAATGGACGTGATCAATGATTATGGAGCGGATGCTCTAAGATTGTACCTCAT AAATTCCCCAGTTGTCCGAGCTGAAACCTTGCGGTTCAAGAAGGATGGAGTATATAATGTTGTGAAAGATGTCTTTCTTCCGTGGTACAATGCTTACAGA TTTCTTGTTCAGAATGCTAAGAGACTTGAGATTGAAGGACTTGCAGTATTTCGTCCTCTTAGTTCATCAGATCTGCAGAAATCTTCTAATGTGCTTGACC AGTGGATCAACTCTGCTACTCAGAGTCTTGTTCATTTTGTTCGCCAAGAAATGGATGCATACAGACTTTACACGGTGGTTCCGTATCTTCTGTCATTTCT TGACAACCTAACCAATGTATATGTCCGTTTCAATCGCAAGAGATTGAAAGGTCGTACGGGGGAAGATGATTGCCGAATTGCTCTTTCCACTCTCTACAAT GTGCTTCTAACTTCTTGCAAAGTGATGTCATCATTCACGCCCTTCTTCACAGAGGTTCTCTATCAAAATTTGCGGAAAGTTAGTGCCAACTCTGAAGAAA GCATTCACTACTGCAGTTATCCTGCGGAAGAGGGAGAGAGAGATGAACGCATTGAGCAAAGTGTCACAAGGATGACGACCATTATCGATCTTGCTCGGAA TATCCGTGAGAGACATAACAAACCTCTCAAGTCACCACTTAGGGAGATGGTGATTGTTCATCCTGATGCAGATTTCCTTGATGATATTGCTGGAAAACTA AGAGAGTATGTGCTAGAGGAACTCAATGTACGATCTCTTGTCCCATGTAAAGACACTTTGAAGTATGCCTCTTTACGTGCGGAGCCCGAGTTCAGTGTGT TGGGTAAACGACTTGGCAAGGATATGGGAGTTGTCTCAAAAGTAATAAAATCGATGTCACAGAAAGATATTCTGGAATTTGAGAAAGCAGGAGAGGTCAC CATTAAGTCGCACGTCCTAAAATCAGACGATATTAAGGTTCTCCGAGACTTCAGATGTCCTGATGGATTGACAGACAAGGAGATTGATGCTGCTGGAGAT GGTGATGTTTTGGTGATTTTGGATTTACGTCCTGATGAGTCGTTGTTTGAGGCTGGTCTTGCTCGTGAGGTGGTGAATAGAATTCAAAAATTGCGGAAAA AGATTGCCCTTGAACCGACTGATGCTGTGGAGGTATACATCGGCTCCTTGGATGACAATAAGCCAAGGTTGGAAAGAGCTCTTAATTCTCAGGAACTCTA CATCAGAAATGCAATTGGTTCTCCGCTGCTTCCATATACTGCAATCCCCCCGCATGCTGTGGTGATTGGAGAAGAGAGTTTCCATGGAATTTCTGGGTTA TCGTTCACTATTTACTTAACAAGGCCAACGCTGGTGTTCAAGTCAGATGCTTGTGCTGAAGTATATGAAGGAAATACAAGATTTGCCCAGATGCTGCAAG TGTACTTGCTATCTAGGGATCATAGCAGTTTGAAATTGGAATTTCAACAAGGAAATGGCAAGGTTGATCAAGGTAGATTCACTCGAGAAGTTGCCTGCCG TGGAATTGACGTTGGAGAAGCATGTGTACTTGAGTGTCGGAGACCAACTTTTGGGAACAACAAGACAATCAGACTTGAAGGGATGCTAATCCTAACAGAA TCAGGGATGGCAAAGAGCCCCACCAGCTCCTTTCCTAGCACTCCTGATAACTCTTCCTCCAGGGGTGCTTCAAGTACTGCTTCTGACAAGAAGAAGAAGT CTATAATTCCCAAGATCTTTAGCTCAAAGAAAATCAACAGAGGAGGATCCGGCGACGATGTCCTAATTGCATCAGATGGAGATTGTCCTGCCCCTGCTGA AAGAGGGACAAGTCCTGGAATTGAAGGCCTCAATCTCTCCAACTTTGATCACTCCATGGCATCATCCACCACAGAAATCAAAGAATTCCGGATTTACGTA GCGACATGGAACGTCGGAGGAAGGACTCCTGATGCCAGCATGAATCTCGAAGATTTCCTGCAAGTGGACGAATCCCCCGATTTATACATTTGCGGGTTTC AGGAAATTGTTCCACTCAGTGCCGGAAATGTGCTGGTGATAGAAGACAGCGAGCCGGCAGCCAAATGGCTAGCCCTCATAAGCCAAACCATCAACAGAAC AAACTACAACTACTTCACCCCTACCTCTCCGAATCCGGCACATAGATCTTCCAACAAGTCTCAAAACAGTAAGGAAACAAAAAACCACAATAACTTCTTC CACAAGCCATCCGTCAGAGTCCTGACGAAAAACCTGAGGGCGGACAGCAGTAGCCTTCTGAAGATCTGCAATTGTGCGGGAGATTTCCCAACGCGAGACA GGCAGCATCGAGGGGGAGAATTCAGCGGTCCGCTTCCGATGGGAACCAGCGCAGGTCAGAATTTCGGGCTCGACAATGACTCGCATAATTCTCCTGCAGC TAATAGCCCCGGAGGAGCCTCCCCTGGATCCACCACCAACCAAATGGTGTACAACCTCATCTCTTGCAAGCAAATGGTCGGGATTTTCCTTTCGGTTTGG GCTCGACAGGAATTGGTCCCCCACATTGGTCACCTCAGAGCATCCTCTTGTGGGACCGGCATCATGGGATGCCTCGGGGAGAAAGAAGGGGACGAGCTGA AGAGGAATTCTGATGTTGCTGAAATCCTGAAGAGCATTCAGTTCCCCAAGATTTGCAAGAATCAAATCAGCCGAGCTCCAGAAAGGATAGCCGATCACGA TCGAGTGCTTTGGTTCGGAGATTTGAACTATCGGATCTCTCTCAGCTACGAAGAAACTAAAGTCCTGCTTGAAGAAAACGATTGGGACACCCTTCTGGAC AGGGATCAGCTGAATATGGAAAGAGATGCAGGGAGGGTATTCGACGAGTTTTACGAAGGCAGGATTCTATTCGCTCCCACTTACAAATACTCACATAACT CCGATTCCTACGCTGGAGAGACCGTAAAGAACAAGAAGAAACGTCGAACACCAGCATGGTGCGATCGAGTATTATGGAAAGGAAGAGGAATGGAGCAAAT GTCGTACGGGAGAGTGGAGTCGAGATTCTCGGATCACAGACCGGTTTGCGCAATATTTGCGGTGGATGTGGAAATGAGTGCGACGAGAAGCAGCAGGTTC AGGAAAGGCTACTCTTGTACAGCTCCAAGGATTCAATATGACAACGACTGTTTGCCGCATCAAAGGCAAAACAACTTCTATGGCTACTAA
AA sequence Show only first row Show all	>Lus10024041 pacid=23141572 polypeptide=Lus10024041 locus=Lus10024041.g ID=Lus10024041.BGIv1.0 annot-version=v1.0 MEDVCEGKDFSFPKEEEKILAFWSQIQAFKTQLSRSESLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQTTTGHHVTRRFGWDCHGLPVENEIDRK LGIKRREEVLQMGIGKYNEECRSIVTRYVEEWEKIITRTGRWIDFDDGYKTMDLKFMESVWWVFGQLFEKGLVYKGFKVMPYSTGCKTVLSNFEAGQNFK DVPDPEIMVAFPIVDDLHNAAFVAWTTTPWTLPSNLALCVNPTFDYVKVRNKYSGKVYVIAECLLSSIPTEKPKSSDSKTSSSKAKGAKTENPMDSYELL EKVKGKELVNKKYVPLFNYFQEFSGTAFRVVADSYVTSDRGTGIVHCAPAFGEDDYRVCIENEIISKGENLIVAVDDDGCFTDRISDFCGRYVKDADKDI IEAVKGNGRLVKTGSFMHSYPFCWRSDTPLLYRAVPSWFVKVESLKDQLLESNSQTYWVPGYVKVGILKSTPFYMRTEDKRFHNWLENARDWAISRSRFW GTPLPVWTSADGEEIVVVDSVAKLESLSGAKVFDLHRHNIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGL DQTRGWFYTLMVLSTALFGKPAFRNLVCNGLVLAEDGKKMSKKLRNYPSPMDVINDYGADALRLYLINSPVVRAETLRFKKDGVYNVVKDVFLPWYNAYR FLVQNAKRLEIEGLAVFRPLSSSDLQKSSNVLDQWINSATQSLVHFVRQEMDAYRLYTVVPYLLSFLDNLTNVYVRFNRKRLKGRTGEDDCRIALSTLYN VLLTSCKVMSSFTPFFTEVLYQNLRKVSANSEESIHYCSYPAEEGERDERIEQSVTRMTTIIDLARNIRERHNKPLKSPLREMVIVHPDADFLDDIAGKL REYVLEELNVRSLVPCKDTLKYASLRAEPEFSVLGKRLGKDMGVVSKVIKSMSQKDILEFEKAGEVTIKSHVLKSDDIKVLRDFRCPDGLTDKEIDAAGD GDVLVILDLRPDESLFEAGLAREVVNRIQKLRKKIALEPTDAVEVYIGSLDDNKPRLERALNSQELYIRNAIGSPLLPYTAIPPHAVVIGEESFHGISGL SFTIYLTRPTLVFKSDACAEVYEGNTRFAQMLQVYLLSRDHSSLKLEFQQGNGKVDQGRFTREVACRGIDVGEACVLECRRPTFGNNKTIRLEGMLILTE SGMAKSPTSSFPSTPDNSSSRGASSTASDKKKKSIIPKIFSSKKINRGGSGDDVLIASDGDCPAPAERGTSPGIEGLNLSNFDHSMASSTTEIKEFRIYV ATWNVGGRTPDASMNLEDFLQVDESPDLYICGFQEIVPLSAGNVLVIEDSEPAAKWLALISQTINRTNYNYFTPTSPNPAHRSSNKSQNSKETKNHNNFF HKPSVRVLTKNLRADSSSLLKICNCAGDFPTRDRQHRGGEFSGPLPMGTSAGQNFGLDNDSHNSPAANSPGGASPGSTTNQMVYNLISCKQMVGIFLSVW ARQELVPHIGHLRASSCGTGIMGCLGEKEGDELKRNSDVAEILKSIQFPKICKNQISRAPERIADHDRVLWFGDLNYRISLSYEETKVLLEENDWDTLLD RDQLNMERDAGRVFDEFYEGRILFAPTYKYSHNSDSYAGETVKNKKKRRTPAWCDRVLWKGRGMEQMSYGRVESRFSDHRPVCAIFAVDVEMSATRSSRF RKGYSCTAPRIQYDNDCLPHQRQNNFYGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10320			tRNA synthetase class I (I, L,...		Lus10024041 [exp]	0	1
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	1.0	0.9569
AT5G64270			splicing factor, putative (.1)		Lus10034803 [exp]	2.4	0.9397
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	4.0	0.9278
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	4.5	0.9244
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10032573 [exp]	5.2	0.9184
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	5.2	0.9287
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10008601 [exp]	7.2	0.8845
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	8.5	0.9186
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	8.8	0.9200
AT5G07940			unknown protein		Lus10021621 [exp]	14.0	0.9010

Compare expression of checked genes

Lus10024041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.