Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22300 741 / 0 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT5G64220 498 / 3e-160 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT5G09410 490 / 6e-158 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT1G67310 274 / 1e-77 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT3G16940 259 / 2e-73 CAMTA calmodulin binding;transcription regulators (.1) AT4G16150 254 / 2e-71 CAMTA calmodulin binding;transcription regulators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041704 [exp] 1602 / 0 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003405 [exp] 512 / 8e-165 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036162 [exp] 506 / 6e-159 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10003119 [exp] 304 / 7e-89 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10011352 [exp] 299 / 6e-86 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10016873 [exp] 288 / 2e-83 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10037738 [exp] 278 / 2e-79 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 256 / 1e-71 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10029852 [exp] 186 / 1e-47 AT2G18750 252 / 1e-71 Calmodulin-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075100 [exp] 733 / 0 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.007G093400 [exp] 731 / 0 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.010G153100 [exp] 419 / 9e-131 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.008G107900 [exp] 312 / 7e-92 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.001G057800 [exp] 301 / 2e-87 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.003G170600 [exp] 292 / 3e-84 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.010G141700 [exp] 274 / 4e-78 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G099733 [exp] 98 / 1e-24 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.004G210100 [exp] 47 / 6e-05 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.005G051500 [exp] 46 / 9e-05 AT4G14750 127 / 6e-33 IQ-domain 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0465 [flax] [poplar] PF03859 [flax] [poplar] CG-1 CG-1 domain
Representative CDS sequence Show only first row Show all	>Lus10024044 pacid=23141583 polypeptide=Lus10024044 locus=Lus10024044.g ID=Lus10024044.BGIv1.0 annot-version=v1.0 ATGGCGGAAACTAGTCTCTCCCCACTCGGAAACCAGCTAGCTGCAGGGTGGAGTGAAGATATTCATCGCCTTCTTCAGGAAGCGCAACACCGCTGGCTAC GCCCCCCGGAAATTTGCCAAATTCTTTCGAGCTATAAGAAGTTCCGTATATCCCCAGAGCCCCAAAACAGGCCTCCAAGTGGTTCTATCTTCCTGTTTGA CCGCAAGGTGACGCGATACTTCAGAAAAGATGGGCACAGCTGGAGGAAGAAAAAGGACGGTAAGACAGTAAGAGAAGCTCACGAGAGGCTCAAGGGAAGT AGTAGGGCGAGTTTCTACCGTGTTAAAGAGACTGCAGAGACTATTTCACATTCACAAAAAACAGATGACGCTAGGCTAAATTCTGAGATGGACACTTCTG CTTCATCCAACTATCATTCTGGCACCTACCAAATGCATGCACAAGCCACAAATACGGAAAACTTGGCCAGTGGTGCTAAAGCCTCAGAATACGAGGATGT AGAATCAGGTGGTGTCATAACTTTTTGCTGTCTTATGGGATGCCTGCATTCTGTTGGAAGATGCATAAGCATATATCCATTTGAAGCTAACAGTGTTATC GGTAATGGGTTAGCCTATGAATCACGAGGACAAGTTGGCTCACCATCATGGGAGAATGGCTTGGAAAACTGTAATTATGGGACTGAGCACATACCTCCCG ACTTCAGAGTTCCAATAAAAGCTGACAATGCACCGACTATTTCCAGACAAGGAGATCTATTAGGTAAGATGTTTATGAATAGCTTTAGCAAATGGCAGGA GTCCACAAGTCATGAGGCAATCCAAGAACAGTGGCAGCGACCAGATGCACACAATAGCATGAAATCAGAAAAAGAATCGGAGCTTCATTCTTCTGTGAAG CATCATTTGTTGGATGGTTCTCAGAGAGACGGTCTAAAGAAACTTGATAGTTTCAATCGTTGGATGAGTAATGAACTTGGAGATGTAGATGAGTCGCCAG TACATTCCACTTCAGCAACATACTGGCAGAATGTTAAAAGTGAGGATGGAGTTGATAATTCCAATATACCCCTTCAATCAGACATGGAACCCTATCTAAT GGCCCCGTCCCTCGCCAATGACCAGCTTTTCAGCATCATTGATTTCTCACCTAGCTGGGTATATGTTGGCACAGAAGTAAAGGTTTTAATCATAGGAAGA TTCTTGAAGAGCCAAGAAGACCTGAAAACCTATAGATGGTCATGTATGTTTGGAGAAGTTGAAGTTGCAGCTGAGGTTATAGCCGAAGGTGTTCTCCGGT TCTATAATCCTTTGCTCAGGGCTGGTAGAATTCCATTTTATGTTACTTGCTCAAATAGGACAGCATGCAGTGAAGTATGCGAGTTTGAATTTCGTGACAG CATTGTTCAAGACATCGACGACACTAATAGTTGTAGCTCTATTGAAAATATCCAAGTACGATTTGGGAAGTTGCTATGCACGGGTCCTAATTCCAGTCAG AATTTCAATCAAAGCAATGCAAGTGAAATATCCCAATTGAGCAGCAAGATTAGAGCACTGCTGAAAAAAGATGGCGATGAGTGGGATTTAATGTTGAAGT CCACTTCAGAGGAGGCGTTTTCAGCACAGAAAGTGAAGGACCAGCTTCTTCAGAAGCTATTGAAGGAAAAGCTACATGATTGGCTCTTGCAGAAGGTAGT TGAAGGTGGAAAGGGCCCCAGTGTACTAGACGAAGTTGGACAAGGGGTGTTGCATTTGGCAGCTGCTTTGGGATATGATTGGGCCCTTGAACCTACAACC GTCGCTGGTGTTAGAGTTGATTTCCGTGATCTTAATGGATGGACTGCACTTCACTGGGCTGCAAGTTGTGGCAGGGAGCGGACGGTTGCTTCTCTCATTA ATCTTGGGGCTGCTCCTGGAGCATTAACAGATCCAACTCCCAGAAATCCCACCAGCATAACACCCGCTGACCTTGCCTCTACAAATGGGCACAAGGGAAT AGCTGGTTTCCTTGCCGAATTTGCATTGACTTCACACTTCATAACACTTTCTGTGGACAAGCGGAATAGTAATGGTGATGTCTCTGGTACAAATGTCCAA ATGCACTCAGAAGCATGTGTAAACGTAGATTTACAAGGAGAATCAATGAAAGAGTCGCTAGCTGCGGTCCGTAATGCTGCCCAAGCCGCTGCTCGTCTCC ACCAAGTATTCAGAGTGCAGTCTTTTCAAAGAAAGCAGGTAAAAGAGAATGGCGATGGCAAGTTAAGAATATCAGAAGAGCAAGCGCTTTCATTAATCAA GGTGAAGGGAAACAAGAAGCCGGATGAGCCAGTAGAAGCTGCTGCAGTAAGGATTCAGAACAAGTTCCGGAGTTGGAAAGGCAGGAGGGAGTTCTTGGTC ATTCGCCAACAGATTGTTAAGATTCAGGCCCATGTTAAAGGACACCAGGTCAGGAAAAATTACAGAAAGATCCTATGGTCTGTTGGCATAGTGGAGAAGG TGATACTTCGATGGAGAAGGAAACGAAGTGGACTTCGCGGGTTTAAACCGGAGTTGCTCACTGAAAGTAGCAGCATCGAACTACATTCGTCGGCCAGAGA GGACGAGTACGATTTCTTTAAAGAAGGAAGGAAGCAAACGGAAGAAAGATCTCGGATTGCTCTTGCCAGGGTGAAGTCTATGGTTCAGTATCCAGAAGCC AGAGACCAATACTGCAGACTTCGGAACCAGATCAAGGGGAGTAAGTCTGTTCATCAGTTAGATACAGGTTCTGAAGCAACGAAAACTGAATTCAGTGACA TTGTCGAACTGGAATCACTGTCAGATCATGATATATTCATGCCTACTGCTTCACCATCCGATTTGATGAAAAGACATTGA
AA sequence Show only first row Show all	>Lus10024044 pacid=23141583 polypeptide=Lus10024044 locus=Lus10024044.g ID=Lus10024044.BGIv1.0 annot-version=v1.0 MAETSLSPLGNQLAAGWSEDIHRLLQEAQHRWLRPPEICQILSSYKKFRISPEPQNRPPSGSIFLFDRKVTRYFRKDGHSWRKKKDGKTVREAHERLKGS SRASFYRVKETAETISHSQKTDDARLNSEMDTSASSNYHSGTYQMHAQATNTENLASGAKASEYEDVESGGVITFCCLMGCLHSVGRCISIYPFEANSVI GNGLAYESRGQVGSPSWENGLENCNYGTEHIPPDFRVPIKADNAPTISRQGDLLGKMFMNSFSKWQESTSHEAIQEQWQRPDAHNSMKSEKESELHSSVK HHLLDGSQRDGLKKLDSFNRWMSNELGDVDESPVHSTSATYWQNVKSEDGVDNSNIPLQSDMEPYLMAPSLANDQLFSIIDFSPSWVYVGTEVKVLIIGR FLKSQEDLKTYRWSCMFGEVEVAAEVIAEGVLRFYNPLLRAGRIPFYVTCSNRTACSEVCEFEFRDSIVQDIDDTNSCSSIENIQVRFGKLLCTGPNSSQ NFNQSNASEISQLSSKIRALLKKDGDEWDLMLKSTSEEAFSAQKVKDQLLQKLLKEKLHDWLLQKVVEGGKGPSVLDEVGQGVLHLAAALGYDWALEPTT VAGVRVDFRDLNGWTALHWAASCGRERTVASLINLGAAPGALTDPTPRNPTSITPADLASTNGHKGIAGFLAEFALTSHFITLSVDKRNSNGDVSGTNVQ MHSEACVNVDLQGESMKESLAAVRNAAQAAARLHQVFRVQSFQRKQVKENGDGKLRISEEQALSLIKVKGNKKPDEPVEAAAVRIQNKFRSWKGRREFLV IRQQIVKIQAHVKGHQVRKNYRKILWSVGIVEKVILRWRRKRSGLRGFKPELLTESSSIELHSSAREDEYDFFKEGRKQTEERSRIALARVKSMVQYPEA RDQYCRLRNQIKGSKSVHQLDTGSEATKTEFSDIVELESLSDHDIFMPTASPSDLMKRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10024044 [exp]	0	1
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	4.6	0.8755
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10026172 [exp]	4.8	0.8779
AT5G67265			unknown protein		Lus10042633 [exp]	9.0	0.8560
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10011405 [exp]	13.2	0.8757
AT1G80930			MIF4G domain-containing protei...		Lus10002210 [exp]	14.7	0.8550
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10023882 [exp]	21.4	0.8377
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10025420 [exp]	23.9	0.8655
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10034336 [exp]	28.0	0.8566
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10035921 [exp]	30.0	0.8489
AT1G73170			P-loop containing nucleoside t...		Lus10015985 [exp]	40.6	0.8016

Compare expression of checked genes

Lus10024044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.