Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39900 132 / 2e-37 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041703 [exp] 419 / 1e-150 AT4G39900 118 / 2e-32 unknown protein Lus10018373 [exp] 45 / 1e-05 AT4G21215 87 / 3e-21 unknown protein Lus10007639 [exp] 45 / 1e-05 AT4G21215 83 / 1e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093200 [exp] 264 / 5e-89 AT4G39900 171 / 9e-53 unknown protein Potri.008G145000 [exp] 45 / 6e-06 AT4G39900 45 / 3e-06 unknown protein Potri.010G097100 [exp] 42 / 8e-05 AT4G21215 48 / 4e-07 unknown protein Potri.004G023000 [exp] 40 / 0.001 AT4G21215 108 / 2e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024045 pacid=23141474 polypeptide=Lus10024045 locus=Lus10024045.g ID=Lus10024045.BGIv1.0 annot-version=v1.0 ATGTCTGCATATCCATCAGAGGATATCCACCCGCCGGCGGGCTTCGACGGGGGTTGCAATCGTCCAGTCGACGGATCATACTTCCAGTTGTTGAATCCAG GGACTGGATTTGATGTTGACAACCAGCATTGTTCTCTAGATGTGTTGCCCATAGTTTTGAAGGAAGTTCCTTCTTTGGAAGATGACACTTCCTTCCATGC TTCACATGGTCTAGGACTATACAGCATTTCCATGATGGAGGACAGCAACACCGATCGACAATGTGCATCACCGCAACTAGCCTGTTTAAGTGTCGTGGGG CTTCCGGCTCCAGCCAAATCCCATACATGCTTAGATTCAGTCGATCTACAAGTTGAAAGTTCAGACGCTTATTCGCCATGCATTGTGGACATTGGTATCA AGATGGACAACTTTGAGCAACCGAAATCCGGTGATGCTGCAGTTGGAAGCTTAAAGACTGGGGGTGTCATTACAGGCATGCTTCAGAGACAAGCAAGCCT AAAAACATGTCGGAAACTAATGGAAGTTTTCGCGAATCCAGGGTCAACGTTGCATAAACTGCTCTCTAAAGAGAAGTCATTCACCGAGAGGGTTCATGAT ACTCCCGTTAACCGGTGGAGGAGGTGCAAGCGTGCAGCCTCGCTTGATTCGAGAAGCATTGTTCTCATGTTCTCAATTTTGTCAAGTTTAGGGACGCTGG TGTTGATATACCTCACCCTGAGAGTTAGGCATGCAGCTGCTGATAGCTTTGGCAGCGCCTAA
AA sequence Show only first row Show all	>Lus10024045 pacid=23141474 polypeptide=Lus10024045 locus=Lus10024045.g ID=Lus10024045.BGIv1.0 annot-version=v1.0 MSAYPSEDIHPPAGFDGGCNRPVDGSYFQLLNPGTGFDVDNQHCSLDVLPIVLKEVPSLEDDTSFHASHGLGLYSISMMEDSNTDRQCASPQLACLSVVG LPAPAKSHTCLDSVDLQVESSDAYSPCIVDIGIKMDNFEQPKSGDAAVGSLKTGGVITGMLQRQASLKTCRKLMEVFANPGSTLHKLLSKEKSFTERVHD TPVNRWRRCKRAASLDSRSIVLMFSILSSLGTLVLIYLTLRVRHAAADSFGSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39900			unknown protein		Lus10024045 [exp]	0	1
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10025866 [exp]	2.4	0.9604
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	2.8	0.9618
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	4.2	0.9527
AT3G58180			ARM repeat superfamily protein...		Lus10006688 [exp]	5.5	0.9337
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	6.0	0.9546
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	7.3	0.9592
AT5G18420			unknown protein		Lus10008554 [exp]	8.2	0.9311
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	9.5	0.9387
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10041499 [exp]	10.1	0.9388
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	13.0	0.9539

Compare expression of checked genes

Lus10024045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.