Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10260 380 / 5e-135 AtRABH1e RAB GTPase homolog H1E (.1) AT2G22290 367 / 8e-130 ATRAB6, ATRAB-H1D, AtRABH1d ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, RAB GTPase homolog H1D (.1) AT2G44610 355 / 2e-125 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT4G39890 311 / 5e-108 AtRABH1c RAB GTPase homolog H1C (.1) AT5G64990 296 / 7e-102 AtRABH1a RAB GTPase homolog H1A (.1.2) AT4G19640 142 / 7e-42 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G45130 142 / 9e-42 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT3G54840 139 / 3e-40 ARA6, AtRABF1, Ara-6, AtRab5C Ras-related small GTP-binding family protein (.1.2) AT4G17160 137 / 7e-40 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1) AT5G65270 131 / 4e-37 AtRABA4a RAB GTPase homolog A4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041702 [exp] 401 / 3e-143 AT5G10260 404 / 7e-146 RAB GTPase homolog H1E (.1) Lus10014336 [exp] 399 / 1e-142 AT5G10260 402 / 3e-145 RAB GTPase homolog H1E (.1) Lus10019501 [exp] 354 / 7e-125 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10043349 [exp] 354 / 7e-125 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10019502 [exp] 199 / 3e-65 AT2G44610 218 / 5e-74 Ras-related small GTP-binding family protein (.1) Lus10026045 [exp] 163 / 2e-50 AT5G10260 209 / 5e-70 RAB GTPase homolog H1E (.1) Lus10028820 [exp] 144 / 4e-42 AT3G54840 354 / 3e-126 Ras-related small GTP-binding family protein (.1.2) Lus10017462 [exp] 145 / 9e-41 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10038334 [exp] 137 / 2e-39 AT5G45130 349 / 3e-124 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075300 [exp] 395 / 4e-141 AT5G10260 400 / 2e-144 RAB GTPase homolog H1E (.1) Potri.002G135500 [exp] 362 / 4e-128 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.003G086700 [exp] 355 / 3e-125 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.001G147900 [exp] 257 / 3e-86 AT2G44610 298 / 2e-103 Ras-related small GTP-binding family protein (.1) Potri.012G117800 [exp] 143 / 4e-42 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.010G226300 [exp] 137 / 6e-40 AT3G54840 373 / 7e-134 Ras-related small GTP-binding family protein (.1.2) Potri.008G035800 [exp] 137 / 1e-39 AT3G54840 367 / 3e-131 Ras-related small GTP-binding family protein (.1.2) Potri.015G113000 [exp] 135 / 6e-39 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.018G079300 [exp] 133 / 3e-38 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.002G138400 [exp] 130 / 4e-37 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10024046 pacid=23141564 polypeptide=Lus10024046 locus=Lus10024046.g ID=Lus10024046.BGIv1.0 annot-version=v1.0 ATGACGTTGATTTTGTCAGGACGAGAGGATGTTGTGGTGGAACGAGGAGCGGACGAGTTGCGGCTGGGTGAGGAAGAACAAGCGACGACGTTCGGGCGTA TCCATGAAAACCTAGAAAACCTAGCGTCGGCAGGCTTGAGCATCTGGTCCTTCCTGGAAGAGCGGAAGCAACCGGAGGGACGATCACCTTCACACTCACA AGGATCATTAATAATGGCGACTGTGTCCCCTCTCGCTAAGTACAAACTTGTCTTCTTAGGCGATCAATCCGTCGGAAAAACTAGTATCATCACTCGCTTC ATGTACGATAAATTCGACACCACTTATCAGGCTACGATAGGAATTGACTTCTTGTCCAAAACAATGTATCTAGAAGATCGCACCGTTAGGCTGCAACTCT GGGATACAGCTGGACAAGAGAGATTTAGGAGTCTTATTCCTAGCTACATCAGAGATTCTTCTGTTGCTGTGGTTGTATATGATGTTGCCAATAGGCAATC GTTCTTGAATACTTCGAAGTGGATTGAAGAGGTACGGACAGAACGAGGAAGCGATGTCATCATTGTCCTTGTTGGTAACAAGACAGATCTTGTTGATAAA AGGCAAGTGTCGATAGAGGAAGGAGACGGCAAGGCTAGAGACTTTGGAGTTATGTTTATCGAAACCAGCGCGAAAGCAGGATTCAACATTAAACCACTAT TTCGGAAGATCGCTGCTGCCCTACCAGGAATGGAAACCCTTTCGTCGACGAAACAAGAAGACATGGTTGACGTGAACCTCAAGCCAACCGTGAATTCGTC TCAGGCCGAGCAGCAGGGAGGAGGGTGCGCTTGTTAG
AA sequence Show only first row Show all	>Lus10024046 pacid=23141564 polypeptide=Lus10024046 locus=Lus10024046.g ID=Lus10024046.BGIv1.0 annot-version=v1.0 MTLILSGREDVVVERGADELRLGEEEQATTFGRIHENLENLASAGLSIWSFLEERKQPEGRSPSHSQGSLIMATVSPLAKYKLVFLGDQSVGKTSIITRF MYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRQSFLNTSKWIEEVRTERGSDVIIVLVGNKTDLVDK RQVSIEEGDGKARDFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQAEQQGGGCAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Lus10024046 [exp]	0	1
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	15.4	0.7347
AT2G28940			Protein kinase superfamily pro...		Lus10040804 [exp]	22.0	0.6886
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Lus10012210 [exp]	24.0	0.6953
AT5G10695			unknown protein		Lus10026229 [exp]	27.9	0.6762
AT4G14450		ATBET12	unknown protein		Lus10041157 [exp]	33.1	0.6931
					Lus10038978 [exp]	33.8	0.7025
AT4G14600			Target SNARE coiled-coil domai...		Lus10036461 [exp]	35.7	0.6413
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008022 [exp]	38.1	0.6852
AT5G18150			Methyltransferase-related prot...		Lus10019138 [exp]	44.3	0.6871
AT2G28940			Protein kinase superfamily pro...		Lus10016536 [exp]	53.6	0.6814

Compare expression of checked genes

Lus10024046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.