Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29090 258 / 4e-87 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT5G19730 153 / 4e-45 Pectin lyase-like superfamily protein (.1) AT2G21610 121 / 4e-33 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT3G17060 111 / 2e-29 Pectin lyase-like superfamily protein (.1) AT2G36700 110 / 5e-29 Pectin lyase-like superfamily protein (.1) AT5G07430 107 / 1e-27 Pectin lyase-like superfamily protein (.1) AT2G36710 105 / 5e-27 Pectin lyase-like superfamily protein (.1) AT5G26810 102 / 1e-26 Pectin lyase-like superfamily protein (.1) AT5G09760 103 / 5e-26 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G47500 101 / 8e-26 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041699 [exp] 327 / 6e-114 AT3G29090 527 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10026047 [exp] 310 / 2e-107 AT3G29090 548 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10014338 [exp] 310 / 3e-107 AT3G29090 545 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10012942 [exp] 149 / 2e-43 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 145 / 4e-42 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 144 / 7e-42 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 140 / 5e-41 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 140 / 2e-40 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10042315 [exp] 121 / 3e-33 AT2G21610 383 / 5e-133 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G128820 [exp] 286 / 6e-98 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.018G068400 [exp] 153 / 4e-45 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G087300 [exp] 139 / 2e-41 AT3G29090 271 / 1e-91 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.007G015700 [exp] 141 / 1e-40 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 121 / 2e-33 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.014G117100 [exp] 117 / 1e-31 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.006G137100 [exp] 114 / 2e-30 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.005G012800 [exp] 110 / 2e-29 AT5G18990 281 / 1e-93 Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 108 / 4e-28 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 106 / 2e-27 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10024050 pacid=23141540 polypeptide=Lus10024050 locus=Lus10024050.g ID=Lus10024050.BGIv1.0 annot-version=v1.0 ATGATTGATCACTACCAGGGAGCAAGGTTAATTGGGACAGCAGATCGTTGTGGTTTCTACAATTGCAGGTTCCTTGGCTGGCAGGATACACTGTATTTGC ATGGGAAACAGTATCGGAAGGATTGCTATATTGAAGGAAGTGTGGACTTCATTTCCGGGAACAGTACTGCTCTACTTGAACATTGTCATATCCATTGTAA ACCAGAGGGTTTTATTACTGCACAAGGCCGAAAATCTTCTCAAGAGACAACTGGTTATGTGTTTTTGAGATGCGTAATCACAGGTAATGGAAATGCATCA TACATGCATCTTGGACGACCTTGGGGACCATTTGGAAGGGTAGTATTTGCGTACACTTACATGGATCATGCATCACTCTTGGAGGATGGACTAACTGGGA CAATGTGCTTCAGGCCAGGTAGTTGCCCATCTGGACGAGTAGGGTGGTGTAGAGAATTGATAGACGAAGAAGCAGATCAATTTGTGATGCATGGATTCAT TGATCCGAATCCAGAAATGTCATGGCTTGCGCAAAGAATGGCAGTGAGGATACCACATTCCGCCTAG
AA sequence Show only first row Show all	>Lus10024050 pacid=23141540 polypeptide=Lus10024050 locus=Lus10024050.g ID=Lus10024050.BGIv1.0 annot-version=v1.0 MIDHYQGARLIGTADRCGFYNCRFLGWQDTLYLHGKQYRKDCYIEGSVDFISGNSTALLEHCHIHCKPEGFITAQGRKSSQETTGYVFLRCVITGNGNAS YMHLGRPWGPFGRVVFAYTYMDHASLLEDGLTGTMCFRPGSCPSGRVGWCRELIDEEADQFVMHGFIDPNPEMSWLAQRMAVRIPHSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024050 [exp]	0	1
AT1G29460			SAUR-like auxin-responsive pro...		Lus10020430 [exp]	4.7	0.9762
AT4G20820			FAD-binding Berberine family p...		Lus10023376 [exp]	4.8	0.9627
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	6.9	0.9718
					Lus10033534 [exp]	8.5	0.9718
					Lus10007991 [exp]	9.1	0.8048
AT4G16566		HINT4	histidine triad nucleotide-bin...		Lus10007467 [exp]	9.2	0.8044
					Lus10039990 [exp]	9.8	0.9718
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10038876 [exp]	11.0	0.9718
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10003652 [exp]	11.4	0.7998
AT1G43780		SCPL44	serine carboxypeptidase-like 4...		Lus10040330 [exp]	12.0	0.9718

Compare expression of checked genes

Lus10024050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.