Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39530 283 / 9e-97 Protein of unknown function (DUF1997) (.1) AT5G39520 255 / 6e-86 Protein of unknown function (DUF1997) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041698 [exp] 489 / 4e-170 AT5G10240 976 / 0.0 asparagine synthetase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087500 [exp] 313 / 3e-108 AT5G39530 301 / 1e-103 Protein of unknown function (DUF1997) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09366 [flax] [poplar] DUF1997 Protein of unknown function (DUF1997)
Representative CDS sequence Show only first row Show all	>Lus10024051 pacid=23141497 polypeptide=Lus10024051 locus=Lus10024051.g ID=Lus10024051.BGIv1.0 annot-version=v1.0 ATGAGTGAAATTGCAGCGGCCGGTTCCTTTATCCCATCAACCCAGAAGCAGCAGCAGCTGCTAAATTGCAATCTTACCAGAAGAGAAAGTACGTGGAAGA AGCAGCTTGAGAGGAAGCAATGGGGGTTGCAACGGTATGCTTCAAGGTCATCAAGGCAGATAAAGAATCAAATATCAGTGCAGAACCCAGCCACATACTC TTCAAGCATGAGCACAAATATAGCTCTTTATGAGCCTCCTGGGGCTTCCTTTGATAGTTATCTAGAGGACAAGACCAGAGTTTTCCAGGCAATGTTTCCT GATAAGCAGAGGAGCCAACAACTAACTCAGGAAGAGTGGAGAATACAAATGTTGCCCATAAACTTCTTGTTCCTGACAGTGTGGCCAACAGTTGATGTGA GGTTGAGCTGCAAAAATGGAGGCAGAGATTACCCACCACACATAAAAAAGGTCATGGAGCTCGAGATTCTGCAGTGGGAGTTGAAAGGGCTTGATGGTGT GATTGAACCATCTCATTTCTCACTCGGTGTGAAAGGAGCATTGTATGCTGACAGAGGAGGAACCCGAAGCCGACTCAAAGGGAAACTGGAGATGGAGATC AGCTTTGTTCTCCCTCCGGTGCTTGCTTTGGTACCTGAAGATATTCGAAACAACGTTGCTGAGTCGGTGCTTACCACATTGGTTCAGAACATGAAGCACA AGGTTAACAGCAGCTTGCTGTCGGACTATAGCAAGTTCAAGGCTGAGAAAGCTCGCTGA
AA sequence Show only first row Show all	>Lus10024051 pacid=23141497 polypeptide=Lus10024051 locus=Lus10024051.g ID=Lus10024051.BGIv1.0 annot-version=v1.0 MSEIAAAGSFIPSTQKQQQLLNCNLTRRESTWKKQLERKQWGLQRYASRSSRQIKNQISVQNPATYSSSMSTNIALYEPPGASFDSYLEDKTRVFQAMFP DKQRSQQLTQEEWRIQMLPINFLFLTVWPTVDVRLSCKNGGRDYPPHIKKVMELEILQWELKGLDGVIEPSHFSLGVKGALYADRGGTRSRLKGKLEMEI SFVLPPVLALVPEDIRNNVAESVLTTLVQNMKHKVNSSLLSDYSKFKAEKAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39530			Protein of unknown function (D...		Lus10024051 [exp]	0	1
AT3G08920			Rhodanese/Cell cycle control p...		Lus10004811 [exp]	1.4	0.9724
AT1G64510			Translation elongation factor...		Lus10023054 [exp]	2.8	0.9711
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10025445 [exp]	4.9	0.9602
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	5.5	0.9691
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	5.5	0.9633
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10038601 [exp]	6.2	0.9549
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	6.7	0.9646
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	8.2	0.9649
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	11.2	0.9620
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10040693 [exp]	11.5	0.9557

Compare expression of checked genes

Lus10024051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.