Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10240 952 / 0 ASN3 asparagine synthetase 3 (.1.2) AT5G65010 939 / 0 ASN2 asparagine synthetase 2 (.1.2) AT3G47340 855 / 0 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) AT3G15450 47 / 2e-05 Aluminium induced protein with YGL and LRDR motifs (.1.2.3) AT4G27450 42 / 0.0006 Aluminium induced protein with YGL and LRDR motifs (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041698 [exp] 1082 / 0 AT5G10240 976 / 0.0 asparagine synthetase 3 (.1.2) Lus10042281 [exp] 873 / 0 AT3G47340 1068 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10031870 [exp] 845 / 0 AT3G47340 1001 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10031300 [exp] 126 / 1e-32 AT5G65010 144 / 2e-40 asparagine synthetase 2 (.1.2) Lus10026376 [exp] 108 / 7e-27 AT3G47340 138 / 3e-38 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10026379 [exp] 66 / 2e-11 AT3G17930 170 / 1e-52 unknown protein Lus10034883 [exp] 49 / 5e-06 AT4G27450 365 / 6e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10033418 [exp] 47 / 3e-05 AT4G27450 369 / 2e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10018484 [exp] 44 / 0.0003 AT4G27450 305 / 3e-105 Aluminium induced protein with YGL and LRDR motifs (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075700 [exp] 986 / 0 AT5G10240 1039 / 0.0 asparagine synthetase 3 (.1.2) Potri.009G072900 [exp] 865 / 0 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.001G278400 [exp] 861 / 0 AT3G47340 1018 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.011G122100 [exp] 46 / 2e-05 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.001G403000 [exp] 44 / 0.0001 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00733 [flax] [poplar] Asn_synthase Asparagine synthase
Representative CDS sequence Show only first row Show all	>Lus10024052 pacid=23141597 polypeptide=Lus10024052 locus=Lus10024052.g ID=Lus10024052.BGIv1.0 annot-version=v1.0 ATGTGTGGAATTCTTGCAGTCTTGGGCTGCACTGACAACTCCCATTCCAAACGTTCCCGCATCATCGAGCTTTCCCGGAGGTTGAGACACAGGGGTCCTG ATTGGAGTGGATTGCACTGCTTTGAAGATTGTTATCTAGCTCACCAGCGTTTGGCTATTGTTGACCCTGCTTCAGGGGATCAGCCTCTTTACAATGAAGA CAAGTCTGTTGTTGTCACTGTTAATGGGGAGATATACAACCACAAGGAGTTGCGCGAGAAATTGAAGTCTCATCAGTTCCGGACGGGCAGTGACTGCGAA GTGATTGCCCATCTTTATGAAGAGTATGGAGAGGATTTCGTGGGCATGTTGGATGGCATGTTTTCCTTTGTCCTTCTTGATACTCGTACCAAAACTTTCA TTGCAGCTCGGGATGCAATTGGTATTACATCCCTTTATATGGGCTGGGGACTTGATGGATCTGTGTGGTTTGCTTCAGAAATGAAAGCATTGAGTGATGA TTGCGAGCGATTTGTGTCTTTCCTGCCGGGTCATATTTATTCAAGCAAAGAAGCAACCCTTCGAAGGTGGTACAACCCACCATGGTACACAGAGAAAGTA CCTTCAACCCCATACGATCCACTATATCTACGGGCGGCTTTCGAGAAGGCATGTACTGGACCCCTCTTAAACGAAGCTGGTTCTTACCAACATGTGCCAT TTGGAGTACTTCTCTCAGGAGGGCTTGATTCTTCACTTGTTGCTGCTGTGGCTTCTAGGAAGATGGTTGAATTAGAATCTGCTTGCCAGTGGGGAACACA ATTGCATAGCTTTTGCGTTGGTTTGAAGGGTTCCCCTGATTTGAAAGCTGCTAGAGAGGTTGCTGATTATCTGCAAACACGCCACCATGAGTTCCATTTT ACTGTCCAGGAAGGGATTGATGCCCTTGAGGAAGTCATTCACCATATTGAAACATATGATGTGACCACTATTAGAGCAAGCACCCCAATGTTCCTTATGT CTCGAAAAATCAAGTCTCTTGGTGTGAAAATGGTACTATCTGGGGAAGGTTCAGATGAAATCTTTGGAGGCTACTTGTATTTCCACAAGGCACCCAACAA GGAGGAGCTTCACCAAGAGACTTGCCGTAAGATTAAAGCTCTGCATCTTTATGATTGCTTGAGGGCCAACAAGTCAACTTCAGCATGGGGTCTAGAAGCT CGCGTACCCTTTTTGGATAAAGAGTTCATAGATGTTGCAATGAGCATAGATCCTGAATGGAAGATGATCCGGCCTGATCTTGGAAGGATTGAGAAGTGGA TATTGCGTAACGCATTTGATGACGAGAAGAACCCATATCTTCCCAAGCACATATTGTACAGGCAGAAAGAACAATTCAGTGACGGAGTTGGATATAGCTG GATTGATGGGTTGAAGGACCACGCAGACAAGCAAGTTACAGATTCAATGTTGATGAATGCAAGCTTTGTATACACGGAGAACACGCCTACAACGAAAGAA GCATATTACTACAGGACTATATTCGAGAAGTTCTTCCCCAAGAGTGCGGCAGGGGCAACTGTCCCAGGAGGTCCAAGCATCGCATGCAGTACTGCAAAAG CAGTGGAATGGGATGCAAGTTGGTCCAAGAATCTCGACCCATCTGGCCGTGCTGCCATTGGAGTTCACGAAGATGCTTACAAGAAAACGGAGGATGCTAA GACTCCCGTGAATGGTACAGCAACTGCGTAA
AA sequence Show only first row Show all	>Lus10024052 pacid=23141597 polypeptide=Lus10024052 locus=Lus10024052.g ID=Lus10024052.BGIv1.0 annot-version=v1.0 MCGILAVLGCTDNSHSKRSRIIELSRRLRHRGPDWSGLHCFEDCYLAHQRLAIVDPASGDQPLYNEDKSVVVTVNGEIYNHKELREKLKSHQFRTGSDCE VIAHLYEEYGEDFVGMLDGMFSFVLLDTRTKTFIAARDAIGITSLYMGWGLDGSVWFASEMKALSDDCERFVSFLPGHIYSSKEATLRRWYNPPWYTEKV PSTPYDPLYLRAAFEKACTGPLLNEAGSYQHVPFGVLLSGGLDSSLVAAVASRKMVELESACQWGTQLHSFCVGLKGSPDLKAAREVADYLQTRHHEFHF TVQEGIDALEEVIHHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEELHQETCRKIKALHLYDCLRANKSTSAWGLEA RVPFLDKEFIDVAMSIDPEWKMIRPDLGRIEKWILRNAFDDEKNPYLPKHILYRQKEQFSDGVGYSWIDGLKDHADKQVTDSMLMNASFVYTENTPTTKE AYYYRTIFEKFFPKSAAGATVPGGPSIACSTAKAVEWDASWSKNLDPSGRAAIGVHEDAYKKTEDAKTPVNGTATA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	0	1
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10022906 [exp]	2.0	0.9202
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	2.4	0.9443
AT1G34110			Leucine-rich receptor-like pro...		Lus10000509 [exp]	2.8	0.9316
AT5G19950			Domain of unknown function (DU...		Lus10019397 [exp]	6.9	0.8985
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	7.7	0.9073
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	8.0	0.9016
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	9.2	0.9211
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10001271 [exp]	10.5	0.8748
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Lus10006518 [exp]	11.1	0.8723
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031277 [exp]	11.7	0.9038

Compare expression of checked genes

Lus10024052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.