Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39860 391 / 3e-129 unknown protein AT4G39870 386 / 4e-126 TLD-domain containing nucleolar protein (.1.2) AT1G78150 288 / 2e-90 unknown protein AT1G35780 280 / 2e-87 unknown protein AT2G22270 256 / 7e-78 unknown protein AT2G05590 218 / 6e-64 TLD-domain containing nucleolar protein (.1.2) AT5G06260 70 / 4e-12 TLD-domain containing nucleolar protein (.1) AT2G22260 55 / 1e-07 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041697 [exp] 647 / 0 AT4G39870 419 / 4e-146 TLD-domain containing nucleolar protein (.1.2) Lus10041695 [exp] 572 / 0 AT4G39860 399 / 1e-140 unknown protein Lus10020921 [exp] 330 / 4e-106 AT1G35780 367 / 1e-128 unknown protein Lus10033456 [exp] 315 / 2e-100 AT1G35780 362 / 1e-126 unknown protein Lus10014476 [exp] 209 / 3e-60 AT2G05590 307 / 4e-104 TLD-domain containing nucleolar protein (.1.2) Lus10023727 [exp] 195 / 1e-51 AT1G04500 315 / 3e-100 CCT motif family protein (.1) Lus10009931 [exp] 77 / 5e-17 AT1G35780 107 / 2e-30 unknown protein Lus10021306 [exp] 69 / 7e-12 AT5G06260 574 / 0.0 TLD-domain containing nucleolar protein (.1) Lus10016984 [exp] 58 / 2e-08 AT5G06260 460 / 5e-161 TLD-domain containing nucleolar protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075800 [exp] 474 / 4e-160 AT4G39870 405 / 1e-140 TLD-domain containing nucleolar protein (.1.2) Potri.007G092700 [exp] 459 / 2e-154 AT4G39870 414 / 3e-144 TLD-domain containing nucleolar protein (.1.2) Potri.005G076000 [exp] 403 / 6e-134 AT4G39860 354 / 3e-123 unknown protein Potri.007G092400 [exp] 395 / 9e-131 AT4G39860 384 / 4e-135 unknown protein Potri.002G095300 [exp] 350 / 1e-113 AT1G35780 364 / 2e-127 unknown protein Potri.005G165500 [exp] 344 / 2e-111 AT1G35780 357 / 2e-124 unknown protein Potri.010G065900 [exp] 216 / 6e-63 AT2G05590 286 / 6e-96 TLD-domain containing nucleolar protein (.1.2) Potri.006G206200 [exp] 73 / 4e-13 AT5G06260 604 / 0.0 TLD-domain containing nucleolar protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07534 [flax] [poplar] TLD TLD
Representative CDS sequence Show only first row Show all	>Lus10024053 pacid=23141562 polypeptide=Lus10024053 locus=Lus10024053.g ID=Lus10024053.BGIv1.0 annot-version=v1.0 ATGGAGAGGAACACTCCCGTTAGAAAGCCACACACTTCCACCGCCGATCTGCTCACCTGGTCCGAGAAGCCTGCTCCCGATTCTCCGGCCACCGCCCCAT CCGCTACCCGCTCCCACCAGCCATCGGATAGGATCGGTAAGGTGCTCTCCGGAGGTCAGGTTACCGACGAGGAAGCTCAAAGCCTCGCTAGCAAGAAGCC GTGTTCAGGCTATAAGTTGAAGGAGATGACAGGCAGTGACATTTTTGGAGCTGATGGCTCTGCAAGTGATGCGTCTGAAACGACTCATGCTAATTCCAGA GCTAGAACCTCGGTTCGTATAGTCCAGGATGGTTATGCTTACTGTGTATCTCAGCAAGCTACGAATGGTATCAGCCAAATATCATTTAGCACCGAGGAGA CTGTCTCTCCCAAGAAGCCTACCTCTATCCCTGAGGTGGCTAAGCAAAGGGAGCTGAGTGGGACGTTGCAAAGTGACAGTGATTCTAAGAACAAGAAGCA GATATCGAATGCGAAATTCAAGGAGATCAGCGGGCATGACATCTTTGCCCCTCCTCAGGAAACAACACCTAGAGCGCATGTTGCTCGCTCCCTAGTTTCC AGAGAAAACAACAAGGAGCATGATGAACCTGCGCCACGAAACATTCGCACTTCTGTCAAAGTATCTAATCCTGCCGGTGGACAGAGCAATATCCTATTTG GTGACGACCCTGTGGTAAAGACAGCAAAGAAGATACACAACCAGAAGTTTCAAGAGTTGACAGGAAACAACATCTTCAAGGGAGATGTTCCTCCTGGATC AGCTGAAAAGCCATTAAGCACAGCCAAACTGAGAGAGATCAGTGGCAACGACATATTTGCCGATGGCAAGGCAGAATCCAGGGACTACTTTGGAGGGGTC CGCAAGCCCCCTGGTGGAGAGAGCAGCATTTCGTTGATAATCAAACAAATTAAAGAAGCAGCAATGGGGAAGCAGAGATCGCTGAGGAGCAAAGCAGTTC ATTTCGTGTCTGATCTCACCACTGTCCTCCTCAACCCTATCTCTGACAAACCTTCTTCCACTCCACATCCTCCCCCAGTTGATGAGGATGAATCAAAAAA GAGTTCAGTAGAGTCAATTACTGAAGAAGATCAAGAAGATTCTGTTAATGGCCCAGATACATCATCTTTCAAGGCATTTCTCTACTCGTTACTGTCTGCT TCAGAGCCAGGAGACAAAGCAGACATAGATGCAGAAAATGAATATCATGCAGAAATGAGCGATCAGCCGTCTCATAGTGAAGTGAAGGAGAACGGGACAA AGAAAAGTTTGCTATCTAAGGGAAAACAATCTCTTAAAACCTTATACCAGTTCACTAGGATAAGTGGGGGTCGAGGTCAAGATCGCAAGGGTGATTCTAC AGCAAATGATTATCCTGATAAATTTGATGGACTTGAGATGAAGGCTATGCCGAGTGGGAAAGAGCCTTCTGCTTTAGAAGTGCTTCCAGACATTTCTGAA CCTTCTTTACTTCTCTCAGAAAAATCAAGGACTGTCCTTTACGCTTCGCTTCCAGTTCTTGTTAAAGAGAAGAAATGGTTACTGCTTTACAGCACATGGA GGCATGGGATTTCGCTCTCGACGTTATATAGACGAAGCATGATTTGGCCTGGTCCTAGTCTGTTGGTTGTTGGAGACAGAAAAGGTGCAGTCTTTGGTGG CTTGGTTGAGGCACCACTAAGACCAACAACCAAAAAATACCAGGGCACGAATACGACTTTTGTCTTCACAAATACTTCTGGGAGTCCTGTTATATTCCGT CCTACAGGTGCCAATCGCTACTTCACATTGTGTTCAACGGATTTTCTAGCAGTTGGTGGTGGCGGCCATTTTGCTCTCTACTTGGACAATGACCTGTTGA ATGGATCAAGTGCAGTGTCGGAGACGTATGGAAACCCTTGCCTTGCATTCTCAGAGGACTTTGAAATAAAAGAGGTGGAGTTATGGGGTTTTGTGTATGG CTCCAAGTACGATGAGCTACTTGCGTCAAGTCGAACAGAGGCTCCTGGGATTTGCCGCTGTTACGGGTGCCGGTTTTTTAGGCCTGACTGTGGGTGTTCT CTTAATTTCCTGCGGGTTCCTTCTTTGCTTTCGCTGGCGCTTCTTGGTCTAGGGTTTCCTGGTATTGTTTCACATCTCCTTTGTCGTCCTGCTCTGGCCA TGCCCCTGCGTTTGATTAACTGCTCTCATGCGATGTCACTCTTCCTCGCACATCATGCTCATTCTCCTGCACACATCCTCACCAATGTTGGTCTCACTTC AGCAGCGGCCATTGCTCTATTTCGGCGACCTGTCCCATTGCGCTTTCACTCATGCATCCTAACCTGTTTCCTCTACGCCATCTACTTCTTTTCGGTCCGC TGGATCCGAAGGAACGTCAACAAGTGGATTTCCCCCGTCAAAGCCAATGCGCCGTGGTGCAAACTAGCTAGCTTGGTGGTCTCGGGACTGTCTGACGTTG CTCAGAAGGAGAGGGAGAAGGAAGCTGAGAGGGCAGCTAAGGAGGTTGAAGAGACGGTGGATAAAGCGCTGAAGGTTCAGAGAAAAGTAGCTGAGAAGGC GAGGGCGGCAGAGAAGGTGCATGCTGAGGCAGCGGCGAAGGAGGAGGCAGAGCAAGCTAAGGCAACGACGAAGTTGACGGTGGCACAGGCTGCATTGGCC AGGGCGTCAGAGATTCTGGAGTTTGAAGGAATGTTAGCCTCTCTTCATTTTGGGGAAGGGATTAATTAA
AA sequence Show only first row Show all	>Lus10024053 pacid=23141562 polypeptide=Lus10024053 locus=Lus10024053.g ID=Lus10024053.BGIv1.0 annot-version=v1.0 MERNTPVRKPHTSTADLLTWSEKPAPDSPATAPSATRSHQPSDRIGKVLSGGQVTDEEAQSLASKKPCSGYKLKEMTGSDIFGADGSASDASETTHANSR ARTSVRIVQDGYAYCVSQQATNGISQISFSTEETVSPKKPTSIPEVAKQRELSGTLQSDSDSKNKKQISNAKFKEISGHDIFAPPQETTPRAHVARSLVS RENNKEHDEPAPRNIRTSVKVSNPAGGQSNILFGDDPVVKTAKKIHNQKFQELTGNNIFKGDVPPGSAEKPLSTAKLREISGNDIFADGKAESRDYFGGV RKPPGGESSISLIIKQIKEAAMGKQRSLRSKAVHFVSDLTTVLLNPISDKPSSTPHPPPVDEDESKKSSVESITEEDQEDSVNGPDTSSFKAFLYSLLSA SEPGDKADIDAENEYHAEMSDQPSHSEVKENGTKKSLLSKGKQSLKTLYQFTRISGGRGQDRKGDSTANDYPDKFDGLEMKAMPSGKEPSALEVLPDISE PSLLLSEKSRTVLYASLPVLVKEKKWLLLYSTWRHGISLSTLYRRSMIWPGPSLLVVGDRKGAVFGGLVEAPLRPTTKKYQGTNTTFVFTNTSGSPVIFR PTGANRYFTLCSTDFLAVGGGGHFALYLDNDLLNGSSAVSETYGNPCLAFSEDFEIKEVELWGFVYGSKYDELLASSRTEAPGICRCYGCRFFRPDCGCS LNFLRVPSLLSLALLGLGFPGIVSHLLCRPALAMPLRLINCSHAMSLFLAHHAHSPAHILTNVGLTSAAAIALFRRPVPLRFHSCILTCFLYAIYFFSVR WIRRNVNKWISPVKANAPWCKLASLVVSGLSDVAQKEREKEAERAAKEVEETVDKALKVQRKVAEKARAAEKVHAEAAAKEEAEQAKATTKLTVAQAALA RASEILEFEGMLASLHFGEGIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39870			TLD-domain containing nucleola...		Lus10024053 [exp]	0	1
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10014952 [exp]	2.2	0.8063
AT2G28310			Protein of unknown function (D...		Lus10041316 [exp]	3.5	0.7499
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10018362 [exp]	4.7	0.7831
					Lus10017544 [exp]	7.9	0.7596
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	11.0	0.7768
AT2G37960			unknown protein		Lus10027749 [exp]	15.3	0.7275
AT3G03550			RING/U-box superfamily protein...		Lus10035677 [exp]	19.7	0.7461
AT5G22120			unknown protein		Lus10004788 [exp]	20.1	0.7234
AT4G39610			Protein of unknown function, D...		Lus10036630 [exp]	20.4	0.7497
AT4G37080			Protein of unknown function, D...		Lus10032768 [exp]	22.3	0.7624

Compare expression of checked genes

Lus10024053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.