Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65020 400 / 6e-141 ANNAT2 annexin 2 (.1.2) AT5G10220 397 / 2e-139 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G10230 394 / 3e-138 ANN7, ANNAT7 annexin 7 (.1) AT1G35720 371 / 3e-129 ATOXY5, ANNAT1 annexin 1 (.1) AT5G12380 305 / 4e-103 ANNAT8 annexin 8 (.1) AT2G38760 251 / 7e-82 ANN3, ANNAT3 annexin 3 (.1) AT1G68090 213 / 4e-67 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT2G38750 159 / 4e-46 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041696 [exp] 621 / 0 AT5G65020 395 / 2e-138 annexin 2 (.1.2) Lus10008227 [exp] 360 / 1e-124 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 359 / 2e-124 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10041140 [exp] 336 / 2e-115 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10036470 [exp] 323 / 3e-110 AT1G35720 406 / 3e-143 annexin 1 (.1) Lus10019780 [exp] 302 / 3e-102 AT5G12380 372 / 1e-129 annexin 8 (.1) Lus10024174 [exp] 251 / 5e-82 AT2G38760 361 / 4e-125 annexin 3 (.1) Lus10024172 [exp] 250 / 2e-81 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10039550 [exp] 221 / 1e-69 AT2G38760 323 / 2e-109 annexin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G092500 [exp] 459 / 7e-164 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.005G075900 [exp] 450 / 2e-160 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.002G095600 [exp] 408 / 9e-144 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.003G200700 [exp] 331 / 1e-113 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G277500 [exp] 310 / 3e-105 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.001G024800 [exp] 270 / 2e-89 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.012G041900 [exp] 219 / 8e-70 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 211 / 1e-66 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.001G024900 [exp] 197 / 6e-61 AT2G38750 371 / 2e-129 annexin 4 (.1) Potri.008G139500 [exp] 178 / 1e-53 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10024054 pacid=23141447 polypeptide=Lus10024054 locus=Lus10024054.g ID=Lus10024054.BGIv1.0 annot-version=v1.0 ATGTCGACCATCAAAGTTCCAGCAAATGTTCCACTTCCTTCCGAGGACGCCGAAGAACTCAACAAGGCTTTCCGTGGATGGGGCACCGATGAGGCAAAGA TAATCTCCATATTAGCTCACAGGAATGCAGCACAACGCACCCTTATCCGGAAGGCTTACACTGAAGCTTACGGAGAGGATCTCCTTGTAACCTTGGCCAA GGAGATTGGCGGCGACTTCTTGAATTGCATGACATTATGGGCGCAAGAACCAGCGGAGCGAGACGCATATCTTGCACACGAAGCCACAAAGAAATTCAGT TCCAGCTATTTGATTGTCATGGAAATAGCCTGCAGCAGATCCTCTGACGACCTTTTCAAGATCAGACAAGCCTATCATGCTCGCTACAAGAAGTCTCTCG AGGAAGATGTTATGGATCAGGCTCAGGGCGAATTCCGAAAGTTGCTGGCTCCTCTTTTGACTGCATTTCGGTACGAGGAAGGGATCGAGGTAGACTTGAA CCTAGCAAAATCAGAGGCTAAGATACTTCATGACAAAATCTCAGCCAAAGCTTACTGGGATGATGAGGTCATTAGGATTCTAAGTAGCAGAAGCAAGCCG CAGCTTAACGCTACGCTCAATCAGTACAACGACGCATTTGGAAGTACAATCACTAAGCATTTGAAGGCGGAGCCAAAGGATGAGTACCTCAAGTTACTGA GAGCAGCCATAAAGTGCCTGACCTACCCAGAGAAGTACTTCGAAAAGGTGTTGAGACTGTCAATGATAGGTTTCGGAACCGATGAAGATGCGCTAACAAG GGCGGTTACCACGAGGGCAGAAGTCGACATGCAACGTATTAAAGAAGAGTACTTCCGCAGAAACAGTGTCACCCTTGAAAGTGCAGTTGCAGGGGATACC TCTGGAGACTACGCCAAGATGCTCCTTGCCTTGATTGGCGATGCTGATGCTTAG
AA sequence Show only first row Show all	>Lus10024054 pacid=23141447 polypeptide=Lus10024054 locus=Lus10024054.g ID=Lus10024054.BGIv1.0 annot-version=v1.0 MSTIKVPANVPLPSEDAEELNKAFRGWGTDEAKIISILAHRNAAQRTLIRKAYTEAYGEDLLVTLAKEIGGDFLNCMTLWAQEPAERDAYLAHEATKKFS SSYLIVMEIACSRSSDDLFKIRQAYHARYKKSLEEDVMDQAQGEFRKLLAPLLTAFRYEEGIEVDLNLAKSEAKILHDKISAKAYWDDEVIRILSSRSKP QLNATLNQYNDAFGSTITKHLKAEPKDEYLKLLRAAIKCLTYPEKYFEKVLRLSMIGFGTDEDALTRAVTTRAEVDMQRIKEEYFRRNSVTLESAVAGDT SGDYAKMLLALIGDADA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65020		ANNAT2	annexin 2 (.1.2)		Lus10024054 [exp]	0	1
					Lus10027235 [exp]	2.2	0.7456
					Lus10016386 [exp]	8.9	0.6120
AT5G01660			unknown protein		Lus10002863 [exp]	11.6	0.6716
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Lus10016878 [exp]	15.6	0.6656
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015093 [exp]	17.9	0.5997
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041033 [exp]	19.0	0.5964
					Lus10008904 [exp]	23.1	0.6145
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041034 [exp]	31.7	0.5871
AT3G52620			unknown protein		Lus10022704 [exp]	33.0	0.5306
					Lus10010526 [exp]	34.3	0.5752

Compare expression of checked genes

Lus10024054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.