Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65030 124 / 2e-35 unknown protein AT5G10210 115 / 4e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041694 [exp] 388 / 1e-138 AT5G65030 122 / 2e-34 unknown protein Lus10041693 [exp] 388 / 1e-138 AT5G65030 122 / 2e-34 unknown protein Lus10041692 [exp] 384 / 4e-137 AT5G65030 118 / 4e-33 unknown protein Lus10014339 [exp] 249 / 3e-84 AT5G65030 135 / 7e-40 unknown protein Lus10026049 [exp] 243 / 2e-81 AT5G65030 129 / 3e-37 unknown protein Lus10026048 [exp] 225 / 2e-74 AT5G65030 129 / 3e-37 unknown protein Lus10014340 [exp] 107 / 2e-29 AT5G65030 62 / 2e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G092300 [exp] 203 / 2e-66 AT5G65030 155 / 8e-48 unknown protein Potri.005G076100 [exp] 189 / 1e-60 AT5G65030 154 / 1e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024055 pacid=23141516 polypeptide=Lus10024055 locus=Lus10024055.g ID=Lus10024055.BGIv1.0 annot-version=v1.0 ATGGCACCCTCTTACGATCAACAACTAATTTCATGCGAGATCATGATCCGCCAAGCCAAGAATGTGGAAGAGTTCATGACCGTGAACAGCCACTACTACA AACCTACTGGCAAGTTGTTTGTCAGGTACTACCTCTCCGCAGGCAACAACAAAAGGATCCAACTCAACACCAAAGAAATCTCAACATCTGCTAGTACTAG TTACAACCATCTAATTTCTTGGAACGAGTCATCCTCTTTGGATTGTGTAGGCACTCAAGACTCCATCCGCAGCCTCAAGAAAAGCCGAGTTGTTTTCGAG CTGAGATGGAGACCCTTCTCATCCTCGAGGCAAAATAATTATAACATGTTTGGCCTTGCATCGGGTTCGAAGCTCGTGGGTAGAGCTGAGCTTCCATGGG AAAGCGTCGTGGAGTCGCCTGGAATGGAAGTTGAGAAGTGGGTTGTTATGAACCCGATTAAGAAGGGTAGTCATGTTAGTTGTGATGGTGTTAAGCCTCC TTCAGTGAAGATTGGGATGAGGGTTAGAATTCCAAGTTCTATGGAGATGACGTCAAACAAGAACACAGGAAGTGATAATAAGTACTTGAGGAATAATGTG GATTATAGTGAGTGTGGGTGTTGTAGACATAGTGGATGCAATTTTTGTGAACATTATGATGTTTATGCCCTGGTGGCTGCTTTTGATTCACTTTAA
AA sequence Show only first row Show all	>Lus10024055 pacid=23141516 polypeptide=Lus10024055 locus=Lus10024055.g ID=Lus10024055.BGIv1.0 annot-version=v1.0 MAPSYDQQLISCEIMIRQAKNVEEFMTVNSHYYKPTGKLFVRYYLSAGNNKRIQLNTKEISTSASTSYNHLISWNESSSLDCVGTQDSIRSLKKSRVVFE LRWRPFSSSRQNNYNMFGLASGSKLVGRAELPWESVVESPGMEVEKWVVMNPIKKGSHVSCDGVKPPSVKIGMRVRIPSSMEMTSNKNTGSDNKYLRNNV DYSECGCCRHSGCNFCEHYDVYALVAAFDSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65030			unknown protein		Lus10024055 [exp]	0	1
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033172 [exp]	11.4	0.7523
AT5G42785			unknown protein		Lus10001961 [exp]	12.2	0.7628
AT2G19460			Protein of unknown function (D...		Lus10006019 [exp]	17.0	0.7426
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10007404 [exp]	33.5	0.7121
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10039213 [exp]	34.0	0.7265
AT1G59730		ATH7	thioredoxin H-type 7 (.1)		Lus10036696 [exp]	38.4	0.7014
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002347 [exp]	39.9	0.6750
					Lus10001069 [exp]	47.9	0.6641
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10000612 [exp]	48.2	0.6746
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10040101 [exp]	70.7	0.6446

Compare expression of checked genes

Lus10024055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.