Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39850 1579 / 0 AtABCD1, ACN2, CTS, PED3, PXA1 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) AT1G54350 175 / 4e-45 ABCD2 ATP-binding cassette D2, ABC transporter family protein (.1) AT1G70610 74 / 4e-13 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT3G28345 73 / 1e-12 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT2G07680 72 / 2e-12 ATMRP11, ABCC13 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1) AT3G28380 72 / 3e-12 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28390 69 / 2e-11 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT4G25960 69 / 3e-11 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT3G28415 68 / 6e-11 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT5G46540 67 / 8e-11 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041690 [exp] 1644 / 0 AT4G39850 1404 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10041691 [exp] 342 / 9e-104 AT4G39850 613 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10001758 [exp] 170 / 3e-43 AT1G54350 882 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10001839 [exp] 127 / 1e-29 AT1G54350 670 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10024162 [exp] 79 / 2e-14 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 78 / 5e-14 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10023929 [exp] 76 / 2e-13 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10014427 [exp] 76 / 3e-13 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10041565 [exp] 75 / 4e-13 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076200 [exp] 1691 / 0 AT4G39850 2062 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.007G092200 [exp] 1643 / 0 AT4G39850 2061 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.010G176400 [exp] 167 / 3e-42 AT1G54350 910 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Potri.017G085000 [exp] 78 / 5e-14 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 77 / 6e-14 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 77 / 6e-14 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 76 / 2e-13 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 76 / 3e-13 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.003G182601 [exp] 73 / 1e-12 AT2G07680 1759 / 0.0 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1) Potri.018G141400 [exp] 72 / 2e-12 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01466 [flax] [poplar] Skp1 Skp1 family, dimerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter CL0241 [flax] [poplar] ABC_membrane PF06472 [flax] [poplar] ABC_membrane_2 ABC transporter transmembrane region 2
Representative CDS sequence Show only first row Show all	>Lus10024056 pacid=23141455 polypeptide=Lus10024056 locus=Lus10024056.g ID=Lus10024056.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCCAACTATTGAAATTTACAGAGCATGGTCGAAGCCTGCTGGCTTCGAGAAGAAAATCTTTATTGTTTGCTGCTGGTATCTTGGTTGTGG GTGGAACAACTGCATATATGCAGTCTCGTTCGAGGATTAAAAAGTCTGATTCATTTGGTAACTATAACGGGGTGGAAGATGATGAAGAAAATTCAGATAA GACAATTACAAAATGCAACAATGCAAAGAAAACTGCAAAGAAAGGGGGCCTGAAATCACTGAAAGTTCTAGCTGCCGTCCTTCTGTCTGAGATGGGGAAA GTGGGTGCAGCAGACCTCTTGGCCATGATAGCCATTGCGGTATTAAGAACTAGTTTGAGCAACCGACTGGCAAAAGTACAAGGTTTTCTGTTTCGGGCAG CCTTTCTCCGTCGTGTGCCATTGTTTCTCCGGCTGATATCAGAAAATATCTTACTGTGCTTCCTGCTATCAACAATGCATTCTACTTCAAAATATGTTAC TGGGACGTTAAGCCTGTGTTTTAGAAAGATACTGACAAAACTTATCCATACACATTATTTTGAGAATATGGCCTACTACAAAATATCCCATGTTGATGGT CGGATCAGCAATCCTGAACAAAGAATAGCAAGTGATGTACCAAAGTTCTGTTCGGAGCTCAGTGAACTTGTGCAGGATGATCTTACAGCTGTGACTGATG TTGTTCTTTACACCTTCCGGCTTGTTTCTTATGCTAGCCCAAAATATTTGGTTTACATATTGGCCTATGTATTGGGAGCAGGTGCTCTCATTAAAAATTT CTCTCCTTCTTTTGGGAAGCTGATGTCTAAAGAACAGCAACTTGAAGGTGAATATCGGCAGCTGCAGTCACGCCTGCGGACCCATGCTGAAAGTATAGCT TTCTATGGTGGTGAGCAAAGAGAAGAATCTCATATACAGGAAAAGTTCAGAACTCTCATTAGACACATGAAAGTTGTTCATCATGAACATTGGTGGTTTG GCATGATCCAAGATTTCCTGGCAAAGTATCTTGGTGCTACCGTTGCTGTTATTTTGATCATTGAGCCTTTCTTTGCTGGCCTTCTTAAACCAGACACTTC AACATTGGGAAGGGCAACAATGCTCAGCAACTTAAGATACCATACAAGTGTTATAATATCTTTGTTTCAGTCACTTGGCACCCTTTCCATAAGTTCTAGA AGGCTAAGTCGTCTGAGTGGTTATGCTGAAAGCATTCATGAATTAATAGCCATATCAAGGGAGCTAGGCAGTGGTGACAAGTCTTTGCAAAGAGATGGGA GCAGGAACTACTTCAGTGAAGCTGATTACGTTGAGTTTTCTGGTGTCAAGGTTGTTACACCAACGGGTAATGTTCTGGTGGAAGATTTGAGTCTTAAAGT TGAACCTGGATCAAACCTGTTAATTACTGGTCCAAATGGTAGTGGAAAGAGCTCACTTTTCCGAGTTCTTGGAGGACTTTGGCCTTTGGTGTCTGGCCAT ATAGTGAAACCTGGTGTTGGTTCTGAGCTTAATAAGGAGATATTCTATGTTCCTCAAAGGCCATACACTGCTGTAGGCACACTTCGAGATCAGTTAATTT ATCCTCTGACCTCTGATCACGAGGTTGAAGCACTTACGCGCGGTGGGATGATCGAGTTGTTGAAAAATGTTGACCTTGAGTATCTATTGGATCGTTACCC CCCAGAAAAAGAAGTAAATTGGGGAGAGGAATTATCTCTGGGAGAGCAGCAAAGGTTGGGAATGGCGAGATTGTTCTATCATAAGCCTAGATTTGCTATT CTTGATGAATGTACCAGTGCTGTTACTACTGATATGGAGGAGCGTTTTTGTGCGAAAGTTCGAGCTATGGGAACATCATGTATAACCATATCACATCGAC CGGCTTTAGTTGCGTTTCATGACGTGGTTTTGTCTTTGGATGGAGAAGGAGGATGGGAAGTTGATAAGAAAAGGAAGGATTCCCCAGCCCTGACTCAAAT GGGAACATATGCCATAAAGAGCTCCGAGACAGAACGTAAAAGTGATGCGATGGTAGTCCAACGCGCATTTGCTACAACAGATGAGGATTCTGAATTTCCA AGTTCGAAGGCACAATCTTATATTTCTGAAGTGATAGCAAGATCACCACAGTTCGATCATAATATTCGCTTGAATGCTGTTGCACAACTACAGAGTACCC CACGGGCCTTGCCATTGCGAGTGGCTGCAATGTTTAAGATACTAGTCCCAACAGTGCTCGACAAGCAAGGTGCAGAATTGCTTGCAGTTGCTTTCTTGGT TATGTCTAGAACATTTGTCTCGGACAGGATTGCCTCACTCAACGGTACTAATTTCTACCTGAGGAAATGGCTTGATTTTCAGATTCATTTCCTTCCATAC CTCTTACTGAATGCTATGACAGGAACAACCGTGAAGTATGTACTGGAGCAAGACAAAGCAGCATTCATTCGATTAGTAGGTATCAGCGTTATCCAGAGTG CTGCATCATCTTTTATTGCACCCTCATTGAGGCATTTGACATCAAGGCTGGCTCTTGAGTGGAGGATTCGTTTGACTCTACATTTGCTAAAGAACTACAT GAGAAACAACGCATTTTACAAGGTTTTCCACTTGTCAAACAAAAATATTGATGCTGATCAAAGGATAACTCATGATCTTGAGAAGTTAACTGCTGATTTA TCTGGCCTGGTGACTGGGATGGTAAAGCCATCTGTTGATATCTTATGGTTCACTTGGAGAATGAAACTTCTAACAGGTCGGAGGGGTGTTACTATATTGT ATGCTTACATGTTTCTTGGTCTTGGTTTTCTACGAGCTGTTACTCCTGATTTTGGTGATCTAGCCAGCCGGGCGCAGGAGCTCGAGGGAACCTTCAGGTT CATGCATGAAAGATTGAGAACACATGCTGAGTCTGTTGCCTTCTTTGGAGGCGGTGCTCGAGAAAAAACTATGATTGAGTCGAGGTTCAAAGAGCTCCTG CGACACTCGACATTGCTTTTGAGAAAGAAATGGTTGTATGGTATACTCGATGATTTTGTCACCAAGCAGCTTCCACACAATGTGACTTGGGGGTTGAGCC TGTTATATGCCATAGAACACAAAGGAGACCGTGCAATGATCTCAACTCAGGGGGAGCTGGCACATGCACTTAGATATTTGGCGTCTGTCGTCTCTCAGAG CTTTTTGGCCTTTGGTGACATTCTTGAACTGCACAAGAAGTTTGTTGAGCATCACAGAAATTATTGGCACGGCAGTCCAAATGGCAGTGGAAAGAGTTCA ATTTTCAGAGTGCTTAGAGGTCTTTGGCCGATTGCGAATGGAAGACTAGCTAAACCATCTCAACATTTTAGTATCTTACACAACCCATCACACCATTTTA GAGAAGAAAGAGGATACGGCTGTGACATTTTCTATGTTCCCCAACGGCCTTATACTTGTTTGGGGACCTTGAGAGACCAAATCATATATCCCCTATCTCG TGATGAAGCAGAACTTAGGACCCTAAGGTTGTTTGGGAAAGATGCAGCTTTTGAACATGCTGACTCAATCGAAGTCCTGGATTCGCGTTTGAGAGTTATT CTGGAGAATGTTAGACTAAATTATCTTTTGGAGAGAGAACTAGGTGGTTGGGATTCTAATCAGAACTGGGAAGACATGCTCTCTCTGGGTGAACAACAAA GATTGGGCATGGCTCGGCTCTTCTTCCACAGTCCTGAATTTGGCATCCTCGACGAGTGCACAAACGCAACAAGTGTGGATGTCGAGGAACAGCTTTATAA GCTTGCTACAGAAATGGGCATCACTGTGGTTACTTCCTCTCAGGGGCTAGTGGATCTTAGCCAAAAGGCTTTAGAAAACGTGATAAAGAGTAAGACTCTA GAGGAAAAAAGAGAGTTGTTTAAGATCACAACCCCTGAGGAAGAGGCACAGGTTCGCAGGAGGCACCGGTGGGCATTCGAATGA
AA sequence Show only first row Show all	>Lus10024056 pacid=23141455 polypeptide=Lus10024056 locus=Lus10024056.g ID=Lus10024056.BGIv1.0 annot-version=v1.0 MASLQLLKFTEHGRSLLASRRKSLLFAAGILVVGGTTAYMQSRSRIKKSDSFGNYNGVEDDEENSDKTITKCNNAKKTAKKGGLKSLKVLAAVLLSEMGK VGAADLLAMIAIAVLRTSLSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTMHSTSKYVTGTLSLCFRKILTKLIHTHYFENMAYYKISHVDG RISNPEQRIASDVPKFCSELSELVQDDLTAVTDVVLYTFRLVSYASPKYLVYILAYVLGAGALIKNFSPSFGKLMSKEQQLEGEYRQLQSRLRTHAESIA FYGGEQREESHIQEKFRTLIRHMKVVHHEHWWFGMIQDFLAKYLGATVAVILIIEPFFAGLLKPDTSTLGRATMLSNLRYHTSVIISLFQSLGTLSISSR RLSRLSGYAESIHELIAISRELGSGDKSLQRDGSRNYFSEADYVEFSGVKVVTPTGNVLVEDLSLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH IVKPGVGSELNKEIFYVPQRPYTAVGTLRDQLIYPLTSDHEVEALTRGGMIELLKNVDLEYLLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPRFAI LDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWEVDKKRKDSPALTQMGTYAIKSSETERKSDAMVVQRAFATTDEDSEFP SSKAQSYISEVIARSPQFDHNIRLNAVAQLQSTPRALPLRVAAMFKILVPTVLDKQGAELLAVAFLVMSRTFVSDRIASLNGTNFYLRKWLDFQIHFLPY LLLNAMTGTTVKYVLEQDKAAFIRLVGISVIQSAASSFIAPSLRHLTSRLALEWRIRLTLHLLKNYMRNNAFYKVFHLSNKNIDADQRITHDLEKLTADL SGLVTGMVKPSVDILWFTWRMKLLTGRRGVTILYAYMFLGLGFLRAVTPDFGDLASRAQELEGTFRFMHERLRTHAESVAFFGGGAREKTMIESRFKELL RHSTLLLRKKWLYGILDDFVTKQLPHNVTWGLSLLYAIEHKGDRAMISTQGELAHALRYLASVVSQSFLAFGDILELHKKFVEHHRNYWHGSPNGSGKSS IFRVLRGLWPIANGRLAKPSQHFSILHNPSHHFREERGYGCDIFYVPQRPYTCLGTLRDQIIYPLSRDEAELRTLRLFGKDAAFEHADSIEVLDSRLRVI LENVRLNYLLERELGGWDSNQNWEDMLSLGEQQRLGMARLFFHSPEFGILDECTNATSVDVEEQLYKLATEMGITVVTSSQGLVDLSQKALENVIKSKTL EEKRELFKITTPEEEAQVRRRHRWAFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10024056 [exp]	0	1
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10008630 [exp]	1.0	0.9514
AT5G19390			Rho GTPase activation protein ...		Lus10036048 [exp]	4.2	0.9366
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	5.1	0.9398
AT4G26450		WIP1	unknown protein		Lus10027096 [exp]	7.1	0.9095
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	7.3	0.9272
AT5G07740			actin binding (.1)		Lus10015724 [exp]	8.9	0.9250
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	8.9	0.9301
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	11.5	0.9218
AT1G31780			unknown protein		Lus10037281 [exp]	12.0	0.9250
AT1G79570			Protein kinase superfamily pro...		Lus10031750 [exp]	12.6	0.9239

Compare expression of checked genes

Lus10024056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.