Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55250 911 / 0 HUB2, HISTONEMONO-UBIQUITINATION2 histone mono-ubiquitination 2 (.1.2.3.4) AT2G44950 384 / 6e-120 RDO4, HUB1 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) AT4G03510 48 / 9e-06 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT5G05130 49 / 2e-05 DNA/RNA helicase protein (.1) AT3G16600 45 / 0.0002 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G74990 41 / 0.0007 RING/U-box superfamily protein (.1) AT3G58030 43 / 0.0008 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041689 [exp] 1600 / 0 AT1G55250 976 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Lus10042890 [exp] 421 / 8e-134 AT2G44950 885 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10028187 [exp] 300 / 3e-89 AT2G44950 731 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10039001 [exp] 45 / 0.0003 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10011027 [exp] 45 / 0.0003 AT5G01960 619 / 0.0 RING/U-box superfamily protein (.1) Lus10011184 [exp] 44 / 0.0003 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10018489 [exp] 44 / 0.0003 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10029292 [exp] 44 / 0.0005 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10022569 [exp] 43 / 0.0005 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G008800 [exp] 1140 / 0 AT1G55250 993 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Potri.002G141300 [exp] 473 / 9e-154 AT2G44950 877 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.014G055800 [exp] 445 / 3e-143 AT2G44950 917 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.003G216651 [exp] 360 / 2e-116 AT1G55250 281 / 9e-92 histone mono-ubiquitination 2 (.1.2.3.4) Potri.006G035700 [exp] 51 / 4e-06 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 47 / 5e-05 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.003G148300 [exp] 45 / 0.0001 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.016G034000 [exp] 46 / 0.0002 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.002G259000 [exp] 45 / 0.0002 AT1G04020 472 / 3e-156 breast cancer associated RING 1 (.1.2) Potri.007G000700 [exp] 45 / 0.0003 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024057 pacid=23141471 polypeptide=Lus10024057 locus=Lus10024057.g ID=Lus10024057.BGIv1.0 annot-version=v1.0 ATGGCGAACTCGGAATCGGACGAGCCAGAAAAGAAGAGGCCTCACTTGAATCCTCCTCTATCGCCAGCCATGTCTCCTAATTACAGCACTTTTCCAGCCA ATAATCAAACCGTTGATGTTGCGGTTCTCCATCCCCAGAATCAAAAGCTTGTTCAGCAATTAGATGTTCAAAAGCGTGAATTGCGTCATCTTGAAGCTAA AATTGAGGAACTCAAAGTTAATCAGGCTTCATATGATGACATTCTCATCACGGCAAACCAAGCGTCGAATGAGTTAGTGGATGATTTGATCCTACTCACT ATACGAGTTGGTGGAAGACCGAATTTGTTACAAACTTTAGATGATGCAGAAGAAACTCGAGGCATGATTCCATCTTGTCCTGCCGATGAAATGTTCCTTT GTAGATTTTTGGGAAAAGATTCACTTAAAGACAGTGGGAATGATGGAGTCGCTGCTTATACTCGTGAAATCCTTGCTTCACGCCACTCCTTCACTATTGG GTTGATGGAGTCTTTGGAGACCACTATTGATACTCAGAGGATGGAGAGTGAGACAATAAAACAGGCTTTGGATGGAAATCTATCCACAGAAGATGCCATC ATTCAGCTGTCAAGGCTTGATGATATGATGAGAGAAGAAGCAAAGAATCTGCATGAGGTGATTGATAATCTCCACATGAAGCATGAAGAATACTTGGACG GAATCCAGAATTACATAAGCACCCATTCAACAGAACAATCTGAGATTTCACGTGTTTCAGGCGACCTGGAGGAATGTTTGGCTGAATTAGAAGATAGCCG GAGAAAGTTGATTGATCTTGAGATGCAAAAAGATAAGGCAGCTGCACTACATGGTCCAGTTCCAAGTGCTGCAAATGGAACCTTGTCCCCGGAGAAGTTA ATGGATAGATCTAAGGGGTTGCGAGAATTGAAAGATGCCATTGAGGAAATGAAGGTGATAGCCGCTGACCGTCTTTCTGAGCTTCAAGATGCAGAGGATG AAAATAAGATTTTATCAGAACATTTGGAAGTTCTTCAGAATGAGCTCAAGGATAATAAACATATCAGCTCGTCCCGTCTCTATAACTTAGTGAACGATCA GCTTCAACACTGGAATGCTGAGGTGGAGCGTTATAAAGTTCAGCTGGAAGTTTTGCAGGCTGATAGGTCTTCAATTGTCAGATGGGAGAAAGAAGCAAAA ATAAAGTTGGAGTCAACTGACTTAGCTAGAAATTCCATCGACAGTCCCGATTCTAGAATTCAAGTGCTGGAAGTCCAGCTGCAGACGTGTAAAATTGAAA AAAATGATCTTGAGATCAAAATGGAAGAAGCCGTCCAGGATTCTGGGAGAAAGGACATTAAAGCAGAATTCCGTGTAATGGCCTCAGCGCTATCCAAGGA GATGGGTATAATGGAAGCCCAATTGAATCGATGGAAGCATACATCAGATGAAGCAATTTCTTTGCGAGAGAAATCCCAATCACAGCAATCTTTGTTAACT GAAAAGACGATAGTGGACGTGTTTGGGCAGGAAGACTCTGGTACTAGAGATATCAATGAAATTAAAGAATCTAAGCGAAGGGCTCTTGCCCAAGTTGAAA CTCTACAAAGTGCTTTGGATGAACATCCTCTTCAGTTGAGAGTTAAAGCAGCTAAGGAGGCTGAGATGGCATGCCAACAAAGACTTACTGCTACTGAAAC TGAAATTGTTGAATTGAGGGCCAAATTAGATGCTTCTGAAAGAGATGTGATGGATCTCAAGGAAGCAATTGCGAGCAAAGACAGGGATGCTGAGGCTTTT ATTTCTGAAATCGAGACTATTGGTCAAGCTTATGAAGATATGCAGACGCAGAACCAGCATCTACTGCAGCAAGTTACAGAAAGGGACGACTACAATATCA AGCTTGTGTCTGACAGTGTGAAGACGAAGCAATCCCAAAGTGTTCTGCTGGCTGAGAAACAGGCCCTAACAAAACAACTCCAGCAATTAAATACGTCAAT AAAGCAAGTGAAATCAAGGATTTCCCACAGTGCGGAACAAATGAAAGCATGTTTTGCGGAGGCAATCCGGAATAATGAAGAAAACAGACATCTGACAATC ACACTTGAGACTGCACGTTGGGAATCAACGGATGCTGAGAAGGAACAGAAGTGTATCAAGTATGCTCTTTCTTCTTCGGAAAAGGAATACGAGCAGATCC AAAAGAAGTCGGATGAAGTCAGGACAGAACTGGAGACTGAAAGATATGAGAGGCAGAAGGTGGAGGAAGAGCTATTGGAGGTGAAGAATCAGATAGTGGA GCTGACTTCGGAGACAGGTGAAGCAGCGATATTGAAACTCCAGGATGAAATCAAAGACTGTAAAAGGATCCTAAAGTGTAGCGTGTGCTCGGACAGGCCA AAGGAAGTGGTAATCGTAAAATGCTACCACCTCTTCTGCAATCCGTGCATCCAGAGGAATCTAGAGTTGCGGCACAGGAAATGCCCAGGATGCGGAACAG CTTTCGGACAGAGTGATGTCCGGTTTGTGAAGATATAA
AA sequence Show only first row Show all	>Lus10024057 pacid=23141471 polypeptide=Lus10024057 locus=Lus10024057.g ID=Lus10024057.BGIv1.0 annot-version=v1.0 MANSESDEPEKKRPHLNPPLSPAMSPNYSTFPANNQTVDVAVLHPQNQKLVQQLDVQKRELRHLEAKIEELKVNQASYDDILITANQASNELVDDLILLT IRVGGRPNLLQTLDDAEETRGMIPSCPADEMFLCRFLGKDSLKDSGNDGVAAYTREILASRHSFTIGLMESLETTIDTQRMESETIKQALDGNLSTEDAI IQLSRLDDMMREEAKNLHEVIDNLHMKHEEYLDGIQNYISTHSTEQSEISRVSGDLEECLAELEDSRRKLIDLEMQKDKAAALHGPVPSAANGTLSPEKL MDRSKGLRELKDAIEEMKVIAADRLSELQDAEDENKILSEHLEVLQNELKDNKHISSSRLYNLVNDQLQHWNAEVERYKVQLEVLQADRSSIVRWEKEAK IKLESTDLARNSIDSPDSRIQVLEVQLQTCKIEKNDLEIKMEEAVQDSGRKDIKAEFRVMASALSKEMGIMEAQLNRWKHTSDEAISLREKSQSQQSLLT EKTIVDVFGQEDSGTRDINEIKESKRRALAQVETLQSALDEHPLQLRVKAAKEAEMACQQRLTATETEIVELRAKLDASERDVMDLKEAIASKDRDAEAF ISEIETIGQAYEDMQTQNQHLLQQVTERDDYNIKLVSDSVKTKQSQSVLLAEKQALTKQLQQLNTSIKQVKSRISHSAEQMKACFAEAIRNNEENRHLTI TLETARWESTDAEKEQKCIKYALSSSEKEYEQIQKKSDEVRTELETERYERQKVEEELLEVKNQIVELTSETGEAAILKLQDEIKDCKRILKCSVCSDRP KEVVIVKCYHLFCNPCIQRNLELRHRKCPGCGTAFGQSDVRFVKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	0	1
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	1.0	0.9248
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	2.4	0.9112
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	3.0	0.9112
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10021888 [exp]	3.2	0.9074
					Lus10002136 [exp]	4.2	0.8798
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	4.9	0.8985
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10041170 [exp]	5.3	0.9001
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10005164 [exp]	6.3	0.9106
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	9.9	0.8924
AT2G46060			transmembrane protein-related ...		Lus10002472 [exp]	10.0	0.8791

Compare expression of checked genes

Lus10024057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.