Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39840 90 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041688 [exp] 0 / 1 AT4G39840 345 / 1e-114 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076500 [exp] 108 / 1e-25 AT4G39840 352 / 2e-117 unknown protein Potri.007G091900 [exp] 102 / 1e-23 AT4G39840 360 / 5e-121 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024058 pacid=23141487 polypeptide=Lus10024058 locus=Lus10024058.g ID=Lus10024058.BGIv1.0 annot-version=v1.0 ATGGCTACTCTCCGCCCTTCCAGCTTGAGCTTCAGAAACGCAATATTGCTTTGCCTCTTCCTCTTCTTCTTCACTTCCCTCTTCCTCTCTTCCGCTTCTT CTTTCTCCGACGACGACCAACCGCTTCCCAAGAAAAAATCCACCACCAGTACTAGCAGCAGCTTGTCAGCTACCAAGAGCAAACCCACCACCTCCTCCCA GCTTCTCAAATCTGATAGCAAGAAGAACCAAACCACCTCCAAGAAAACTTCCACCACCACTGCTACCGATTCCCTTTCTTCTTCTTCCAAGAACCATACC AAACTATTGAAAACCAGCAAATCCTCTAATTCCACTAAATCATCATCAACCACCAAGAGCAGCAGTGATCCCAACAAGGCTACTGCTGCAACCTCTGAGC TCAAACTCAAGAAGAAGTCCACAAATTCCACTAATGACAGTACCTTTCCTCAGCTCCTTAAGCAGAAAGACAAGAAGCAGCTCAACTCCACTACCACCAA AACCAAATCCCTTAAGGATTCAGATCCAATCAAGCTATCATCATCATCAAGCTCTTCCAAGAACAAAACCACATCCAAATCACCCGCCGCTAAGAAATCC CAAACCCTAACCCCCAATTCAGATTCCACCGACAAGAAGAAACAAACAACGACAAAATCCGCCGCTTCCGTGACGATGAAAAAGCAGCCCCGAATCCCGT CGAGCTGGATCGAGCCAGAAGACGAAGAGGAAGGTGACCTAGTGGCCGAGTTCAGAGATCTGCCATCCAAGTTCCAGCAGCATCTCATTCCCGACCTGGA AAGGATCTCGATGACTTCCAGAAAGTACCTTACCAAAGCGAACAAGGAAATGACGAGAGGATTCAAGCCGATCGTCGGCAACAAGTACGCCCAAAAATTC CCCAGCCACAACCGCGTCGGTGGTGTCGTTTGCTTTCATCATCATCCCGCTCCTCCTCGTCTCCCTGATCGTAAACCGGATCAAGGCCTACTTCTCCCTC CAGAAGCTCCTCATCTTCGTCCAGGTCTACCTCTCGATCTACTTCTCCATCCTCTGCCTCTCATCTTTAGCCACGGGGCTGGAGCCGCTGCGGTTCTTCT ACGCCAGTGCCGGAGCAACCTACTTCGGCATCATGCTCTTCCAGACATTGGCGTACCTCTTCTATCTCTTCCTCTTACTCGTCTACTTGGTGCTCGTCTT CTCGCCCTCATCAGCGGCTGCCTCCGCCGGGATGGGGACGAAGATGATGGGCCTGGGCCAGGTGTTGATGGGCTTCGCGATTGGGGTCCACCTCTACGTG GCGGTTTTCCATAG
AA sequence Show only first row Show all	>Lus10024058 pacid=23141487 polypeptide=Lus10024058 locus=Lus10024058.g ID=Lus10024058.BGIv1.0 annot-version=v1.0 MATLRPSSLSFRNAILLCLFLFFFTSLFLSSASSFSDDDQPLPKKKSTTSTSSSLSATKSKPTTSSQLLKSDSKKNQTTSKKTSTTTATDSLSSSSKNHT KLLKTSKSSNSTKSSSTTKSSSDPNKATAATSELKLKKKSTNSTNDSTFPQLLKQKDKKQLNSTTTKTKSLKDSDPIKLSSSSSSSKNKTTSKSPAAKKS QTLTPNSDSTDKKKQTTTKSAASVTMKKQPRIPSSWIEPEDEEEGDLVAEFRDLPSKFQQHLIPDLERISMTSRKYLTKANKEMTRGFKPIVGNKYAQKF PSHNRVGGVVCFHHHPAPPRLPDRKPDQGLLLPPEAPHLRPGLPLDLLLHPLPLIFSHGAGAAAVLLRQCRSNLLRHHALPDIGVPLLSLPLTRLLGARL LALISGCLRRDGDEDDGPGPGVDGLRDWGPPLRGGFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39840			unknown protein		Lus10024058 [exp]	0	1
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	1.0	0.8947
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	2.0	0.8607
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10031685 [exp]	3.9	0.8500
AT4G38710			glycine-rich protein (.1.2)		Lus10012166 [exp]	5.3	0.8216
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	6.9	0.8295
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	7.1	0.8305
AT1G32860			Glycosyl hydrolase superfamily...		Lus10001660 [exp]	7.5	0.8385
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10038599 [exp]	9.6	0.7844
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031835 [exp]	11.8	0.8107
AT4G24805			S-adenosyl-L-methionine-depend...		Lus10013662 [exp]	13.1	0.7937

Compare expression of checked genes

Lus10024058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.