Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15760 132 / 3e-38 Sterile alpha motif (SAM) domain-containing protein (.1) AT1G80520 124 / 2e-35 Sterile alpha motif (SAM) domain-containing protein (.1) AT2G12462 88 / 6e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041687 [exp] 327 / 8e-115 AT1G15760 158 / 1e-48 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10001679 [exp] 100 / 2e-25 AT2G12462 136 / 5e-39 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G204600 [exp] 154 / 3e-47 AT1G15760 202 / 2e-66 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.003G012100 [exp] 150 / 9e-46 AT1G15760 204 / 3e-67 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.006G061400 [exp] 105 / 1e-27 AT2G12462 180 / 3e-56 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF07647 [flax] [poplar] SAM_2 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10024059 pacid=23141582 polypeptide=Lus10024059 locus=Lus10024059.g ID=Lus10024059.BGIv1.0 annot-version=v1.0 ATGGATTGGTTCTCATGGCTGTCAAAGAGTGGACTTGATCCATCTCTAGTGTACGAATACGGTCTATCGTTCTCCAACAACGAGCTAGAAGAAGAAGACA TAGCATACTTCAACCATGAGTTCCTCCAGAGCATGGGGATCTCTATCGCCAAGCACAGGCTCGAGATCTTGAAGCTAGCCAAGAAGGCTAAATTGGTAAG AAGTACTGAAGGAAAAAGGAAGAAGATTGTAAACACCAATTATAGTAGTCCACATGCCATGGATAGAGTTGTTGTAGCAATTAGGAGGAGGTTGACCAAG TTTCTAAAGGTGTTGACTCGACAAGATCAAGAGGATGATGAATCGGGGGCTGCCCTGGTTGTGGGTCCGAGGAGGATGATTGCTGGTGGTGGGTATGGAA GCAGTAGGTGGAGGATGGAAGCTATGCTGAAGAGGAACATCAATGACAACAATAAGAAAAAGAAGTTGATGATGGTGAGTAAGTATAAACAGGATGAGAA GCTGATGATGCTGACTAATGGAAGCCCTATGATGATGTATGGAGCGGTGGAGAAGGTTATGGATGAACATGATGATGATGATGATGATCATGAACATCAA GTGTACTATTGGTCAACTCCTGCTGCTGTTGAAGACATCAGGTGGGATGCAATGTTCCAGAATTTGAAACCTACTTGA
AA sequence Show only first row Show all	>Lus10024059 pacid=23141582 polypeptide=Lus10024059 locus=Lus10024059.g ID=Lus10024059.BGIv1.0 annot-version=v1.0 MDWFSWLSKSGLDPSLVYEYGLSFSNNELEEEDIAYFNHEFLQSMGISIAKHRLEILKLAKKAKLVRSTEGKRKKIVNTNYSSPHAMDRVVVAIRRRLTK FLKVLTRQDQEDDESGAALVVGPRRMIAGGGYGSSRWRMEAMLKRNINDNNKKKKLMMVSKYKQDEKLMMLTNGSPMMMYGAVEKVMDEHDDDDDDHEHQ VYYWSTPAAVEDIRWDAMFQNLKPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80520			Sterile alpha motif (SAM) doma...		Lus10024059 [exp]	0	1
					Lus10032385 [exp]	1.0	0.8774
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10031545 [exp]	1.4	0.8337
AT1G52342			unknown protein		Lus10043217 [exp]	4.0	0.8279
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	4.9	0.8194
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	5.1	0.7631
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001745 [exp]	8.5	0.7665
AT5G12300			Calcium-dependent lipid-bindin...		Lus10001346 [exp]	10.5	0.8263
AT1G27990			unknown protein		Lus10037043 [exp]	11.0	0.7570
AT1G76520			Auxin efflux carrier family pr...		Lus10025166 [exp]	11.5	0.7261
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	11.6	0.7990

Compare expression of checked genes

Lus10024059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.