Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 1986 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT2G36380 1668 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G66950 1662 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT3G16340 1588 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15210 1584 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G59870 1582 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT2G26910 1577 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT3G30842 1447 / 0 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT2G29940 1417 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G53480 1374 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024060 [exp] 2630 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 2316 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 2225 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 1990 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1870 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024062 [exp] 1763 / 0 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041685 [exp] 1634 / 0 AT1G15520 1271 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10019453 [exp] 1589 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10008984 [exp] 1585 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048900 [exp] 2123 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 2108 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 2105 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 2102 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 2093 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 2027 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 2017 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 1961 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 1959 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 1805 / 0 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10024061 pacid=23141494 polypeptide=Lus10024061 locus=Lus10024061.g ID=Lus10024061.BGIv1.0 annot-version=v1.0 ATGGAAGGGGGCGACCTTATCAAGGCGAGGAACAGCCTCCGGCGAGGAGGCTCTGCTTCCGTTTGGAGAAACAATCCTTCCGACGTCTTTTCTTCCTCTT CGAGGGAAGAAGACGACGAGGAAGCCTTGAAATGGGCGGCTCTAGAGAAGCTACCCACTTACGACCGTCTCAGGAAAGGCATTTTGGCCAGTGCTTCGAG AACCGAGCTCAGCGAGATCGACGTCCACAACCTTGGAGTTGAGGAAAAGAAAGTTCTTTTGGATCGGCTGGTTAAGGTTGCTGACAAGGATAACGAGAAG TTCTTGACCAAGTTCAAGAACAGAATTGACCGGGTTGGAGTCGAGCTCCCAACTATTGAAGTTAGGTATGAACATCTTAACGTTGAAGCAGAGGCTACCG TTGGGAGCAAAGCTCTGCCCACCTTCATTAACTTCTCTCTTGGGATATTCAAGGGTATCTTCGATATGTTGCATCTGCTTCCAAACAAGAAGAGACATCT GACGATCCTTAACGATGTTAGTGGAGTCATCAAGCCAGGGAGATTGACTCTGCTTCTGGGTCCACCAAGTTCTGGGAAAACAAGTTTGTTGCTGGCTTTG GCGGGAAGGCTAGATCCGAATCTGAAGGTTTCAGGGAGGGTTACTTACAATGGACATGATATGCATGAGTTCATTCCCCAGAAAACTTCAGCTTATATTA GTCAGCATGATCTTCATATGGGAGAGTTGACTGTCAGGGAGACTTTGGCTTTTGCAGCCAGAGTCCAAGGAGTTGGTTCTCTTCATGATATGTTGGCTGA GTTGTCTAGAAGAGAAAAGGCAGCAAATATTAAGCCTGATCCTGACATTGATGTCTTCATGAAGGCTGCTGCAACAGAAGGTTTAGAAAGCAATGTGGTC ACAGACTACGTTTTGAAGATTTTGGGGCTCGAAGTTTGCGCAGACACTCTCGTGGGAGATGAAATGATCAGAGGCATCTCTGGAGGACAAAGGAAACGTG TCACTACTGGTGAAATGCTTGTTGGACCAGCCAGGGCCTTGTTTATGGATGAAATATCAACTGGGTTGGATAGTTCAACTACTTTCCAGATCGTGAACTC ACTGAAACAATCCAATCACATCTTGAATGGAACGAATGTCATTTCTCTCCTTCAGCCTGCTCCGGAGACATATGATCTCTTCGATGACATTATACTGCTG TCAGATAGCCAGGTTGTGTACCAGGGTCCCCGCGAAAATGTTCTCGAATTCTTTCAGCAGATGGGATTCAAGTGCCCTGACAGGAAAGGAGTTGCTGATT TCTTACAAGAAGTCACATCTAAGAAAGACCAGAAACAGTATTGGGCAAGAAGGGATCAGCCTTACCGTTTTGTAACGACGAAGGAGTTCGCTGAAGCATT CCAATCTTTCCATGTTGGAAGGAAAATCGCAGATGAGCTTGCAGTTCCTTATGACAGGACCAAGAGCCACCCTGCTGCCTTGGCTACCAAGAAATATGGA ACTGGAAACAAGGAGCTTCTCAAAGCTAGCTTCTCAAGAGAGTTCTTGCTCATGAAGAGGAACTCCTTTGTCTACATCTTCAAGCTGACTCAACTATTCA TAATGGCAATACTAGCCATGACAGTATTCTTTAGGACGGAGATGCACCGAGACTCTATCGAGGATGGAGGGATGTTTGTGGGAGCACTCTTCTTCACTCT CATTATGATCATGTTCAATGGAATGGCGGAACTTTCCATGACCATTGCAAAGCTTCCGGTGTTTTACAAGCAAAGGAATCTGTTTTTCTATCCTCCATGG ATTTACTCCATTCCTCCTTGGATCCTCAAGATTCCGGTCACCTTTCTCGAGGTTGCTGTTTGGGTCTTCCTAACTTACTATGTCATTGGATTTGATCCCA ACTTTGGAAGGATGATAAGGATGTATATACTGCTGGTAGCCATCAACCAGATGGCATCTGCTCTCTTTCGCTTCATCGCAGCAACCGGGAGGAACATGAT TGTGGCCAACACCTTTGGTTCATTTGTTTTGCTCTTGTTGTTTGCATTGAGTGGCTTCATCTTATCAAGAGAGGATGTAAAGAAATGGTGGATTTGGGCT TACTGGGCATCACCTATGATGTATGGCCAGAATGCAATAGTGATCAATGAGTTCCTTGGACACAGCTGGAGCCATGTTCCTGCGAACTCGAACTCAACGG AATCACTAGGAATACAAGTATTGAGGTCTCGTGGGTTCTTCACAGAGCCACATTGGTATTGGCTTGGAGTAGGAGCATCACTTGGGTTCCTTTTCCTGTT CAACATCTTGTATGCTATGGCTCTTACTTTCTTCGACCAATTCGAGAAGCCTCAAGCTGTCATATCTGACGATGCCAACGAATCAAATGCGCAAGCAGGA GCTGTCGAGATGTCACAACACAGAGCTAGCGGTGGTGTCATAACTGCGTCAGATGATGAGACCAGTGGGAACAAGAAGAAGGGGATGGTTCTTCCGTTTG AGCCTCACTCAATTACCTTCGACGATGTTGTGTACTCTGTTGACATGCCACAGGAAATGAAAGCACAAGGTGTGGCCGAGGACAAATTGGTGCTCCTTAA GAAGGTTAGTGGTGCCTTCAGGCCGGGTGTGTTGACCGCTCTAATGGGAGTAAGTGGTGCCGGTAAAACGACACTTATGGATGTGTTGGCTGGAAGGAAA ACCGGTGGCTACATTGAAGGAAACATCACAATCTCCGGATTCCCTAAGAAGCAAGAAACTTTTGCTAGGATTTCTGGATACTGTGAGCAGAATGACATCC ATTCTCCACAAATGTTTGTTGAAGAAGTTATGGATCTTGTGGAGCTAAACCCATTGCGTAATTCGCTAGTGGGACTCCCAGGTGTGAGTGGGTTGACAAC CGAGCAAAGGAAGAGGTTAACCATTGCTGTCGAATTAGTGGCAAACCCGTCGATAATCTTCATGGATGAGCCAACCTCAGGATTGGATGCTAGAGCTGCT GCAATTGTCATGAGAACAGTGAGGAACACTGTGGACACCGGTAGAACCGTTGTCTGTACCATTCATCAGCCAAGTATTGACATTTTTGAAGCTTTTGATG AGTTGTTCTTGTTGAAGAGAGGCGGACAAGAGATATATGTCGGTCCATTGGGACGCCACTCTACTCATCTTGTCAAATACTTTGAGGAGATTGATGGAGT GAGTAAAATCACCGATGGATATAACCCAGCTACCTGGATGTTGGAAGTCACTACCACAACGCAAGAAATAGCAATGGGAGTTGATTTTGCTGATATTTAC AGGAACTCCGACCTCTATAAGAGAAACAAAGCATTGATTCAGGACTTGAGCAAGCCAGCCCCAGGAGCAAAAGAGCTATATTTCCCAACACAATACTCAC AGACATTCTGGACACAATGCATGGCTTGCTTGTGGAAGCAGCATTGGTCTTACTGGCGTAACCCTCCTTATACTGCTGTTAGATTCTTGTTCACTACCTT CATTGCTCTCATGTTCGGAACCATGTTCTGGGATCTTGGTGGCAAAACATCGAGACAACAGGACCTTTTCAACGCAATGGGAGCAATGTTCGCAGCAGTG CTCTTCCTCGGTGTCCAAAATGCATCATCAGTACAACCCGTGGTAGCCATTGAGAGAACAGTCTTCTACAGGGAGCGAGCTGCAGGAATGTACTCAGCTT TACCTTATGCCTACGCTCAGGTGGTGATTGAGCTGCCATACATCCTGGCACAAGCAGTTGTGTACGGTGTGATCACATACGCAATGATTGGGTTCGAATG GGACGCTGCAAAGTTCCTATGGTACATCTTCTTCATGTACTTCACCCTCCTCTACTTCACCTTCTACGGAATGATGACAGTCGCAATCACGCCAAACCAC CACATTGCTGGCATCATCTCTTCCTTCTTTTACAACATCTGGAACATATTCGCTGGATTCATCATCCCCAGACCCAGGATTCCAGTGTGGTGGAGGTGGA ACTACTGGGCCGACCCGATCTCGTGGACATTGTACGGGTTGATTACTTCGCAGTTTGGAGATTTGAGGACCCCAATGGAGTCTGGAGAAGCTGTTGAAGA TTTCCTGAGGAGTTACTTCGGGTTCAAGCATGATTTCTTGGGAGTTGTTGCTGCTGTTATGGTTGGATTGGCAGTTGTCTTTGCCCTGATCTTTGCCGTG TCAATCAAGTCTTTCAACTTCCAGAGAAGATGA
AA sequence Show only first row Show all	>Lus10024061 pacid=23141494 polypeptide=Lus10024061 locus=Lus10024061.g ID=Lus10024061.BGIv1.0 annot-version=v1.0 MEGGDLIKARNSLRRGGSASVWRNNPSDVFSSSSREEDDEEALKWAALEKLPTYDRLRKGILASASRTELSEIDVHNLGVEEKKVLLDRLVKVADKDNEK FLTKFKNRIDRVGVELPTIEVRYEHLNVEAEATVGSKALPTFINFSLGIFKGIFDMLHLLPNKKRHLTILNDVSGVIKPGRLTLLLGPPSSGKTSLLLAL AGRLDPNLKVSGRVTYNGHDMHEFIPQKTSAYISQHDLHMGELTVRETLAFAARVQGVGSLHDMLAELSRREKAANIKPDPDIDVFMKAAATEGLESNVV TDYVLKILGLEVCADTLVGDEMIRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLKQSNHILNGTNVISLLQPAPETYDLFDDIILL SDSQVVYQGPRENVLEFFQQMGFKCPDRKGVADFLQEVTSKKDQKQYWARRDQPYRFVTTKEFAEAFQSFHVGRKIADELAVPYDRTKSHPAALATKKYG TGNKELLKASFSREFLLMKRNSFVYIFKLTQLFIMAILAMTVFFRTEMHRDSIEDGGMFVGALFFTLIMIMFNGMAELSMTIAKLPVFYKQRNLFFYPPW IYSIPPWILKIPVTFLEVAVWVFLTYYVIGFDPNFGRMIRMYILLVAINQMASALFRFIAATGRNMIVANTFGSFVLLLLFALSGFILSREDVKKWWIWA YWASPMMYGQNAIVINEFLGHSWSHVPANSNSTESLGIQVLRSRGFFTEPHWYWLGVGASLGFLFLFNILYAMALTFFDQFEKPQAVISDDANESNAQAG AVEMSQHRASGGVITASDDETSGNKKKGMVLPFEPHSITFDDVVYSVDMPQEMKAQGVAEDKLVLLKKVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK TGGYIEGNITISGFPKKQETFARISGYCEQNDIHSPQMFVEEVMDLVELNPLRNSLVGLPGVSGLTTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSTHLVKYFEEIDGVSKITDGYNPATWMLEVTTTTQEIAMGVDFADIY RNSDLYKRNKALIQDLSKPAPGAKELYFPTQYSQTFWTQCMACLWKQHWSYWRNPPYTAVRFLFTTFIALMFGTMFWDLGGKTSRQQDLFNAMGAMFAAV LFLGVQNASSVQPVVAIERTVFYRERAAGMYSALPYAYAQVVIELPYILAQAVVYGVITYAMIGFEWDAAKFLWYIFFMYFTLLYFTFYGMMTVAITPNH HIAGIISSFFYNIWNIFAGFIIPRPRIPVWWRWNYWADPISWTLYGLITSQFGDLRTPMESGEAVEDFLRSYFGFKHDFLGVVAAVMVGLAVVFALIFAV SIKSFNFQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024061 [exp]	0	1
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024060 [exp]	1.0	0.9862
					Lus10008659 [exp]	6.2	0.8958
AT2G15220			Plant basic secretory protein ...		Lus10019807 [exp]	7.2	0.9257
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	7.9	0.9208
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10017991 [exp]	8.9	0.9126
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10030472 [exp]	10.7	0.8682
AT1G30755			Protein of unknown function (D...		Lus10013554 [exp]	11.3	0.9196
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	20.1	0.8884
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10036931 [exp]	21.1	0.8841
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10008066 [exp]	29.5	0.9015

Compare expression of checked genes

Lus10024061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.