Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 734 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 698 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 669 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 644 / 0 ARK1 receptor kinase 1 (.1) AT4G21390 639 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G65800 626 / 0 ARK2 receptor kinase 2 (.1) AT4G27290 619 / 0 S-locus lectin protein kinase family protein (.1) AT1G61610 617 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 617 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 608 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041680 [exp] 912 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10018402 [exp] 895 / 0 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 888 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 871 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 848 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 845 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030766 [exp] 836 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 836 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 830 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036400 [exp] 954 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 937 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 934 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 931 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 923 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 894 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 804 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 791 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 790 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 743 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10024064 pacid=23141560 polypeptide=Lus10024064 locus=Lus10024064.g ID=Lus10024064.BGIv1.0 annot-version=v1.0 ATGAAGGGCTTCAGGATTGGAGGTAGATATGTTCTTATTACTTTGTTTCTCATCTTAAAAATCCTGCTTTATACCACCATTGCTAGAGACACTCTGGAAG TTACCCAAACCATTGAAGATGGTAGTACGCTCATCTCCAATGGCGGTAATTTTGCCTTGGGTTTTTTCAGCCCTGAAAGTTCTAGCAGCAACAGGTACCT TGGAATCTGGTACCATAAAGTAACAGTTCAAACTGTGGTGTGGGTAGCCAATAGAAACTCCCCAATCACTGGAACCTCAGGGGTGCTCTCTCTTGATGGA TATGGCGGCCTTGTTCTCTACAGTAGCAACAATGACCAAAGGGCTCCGGTGTGGTCTGCTAATGCTTCTCACCTGGCACTGGATACATATGCAGCTCAGT TGTTGGATTCAGGGAATCTGGTCTTATTGCAAGGTACACAGCGTAGAATTGTGTGGCAAAGCTTTGATTATCCTACGGATGCTGCGCTGCCAGGGATGAA GATTGGCCTGAATCTGAAAACAGGCCTGGATAGCTCCTTGACATCCTGGAGGTCTTCCAATGACCCTGGAATTGGAGACTACTCATTCAAGCTTGATCCG AATGGCTCGCCACAGTTCTTCCTTCAAAGCAGAGGAAACCATTACTGGCGTAGCGGTCCCTGGCCATGGGGGAAGTTCCCTGATATATACAACTATACGT TTGTCAACAACGAAGATGAAATATACTTCTCGTTCTCTGTTAACGACAAATCTCTTCTGTTAAGAACAGTAGTCGATTATTCAGGAATAATGAAGCGATT AAGCTGGCATGAAAATGAAGGCCAGTGGAATGAGTACTGGTCGGCACCTAAGTATAGATGTGATTCTTACGGGCAGTGTGGCGTTTACAGCATATGTGAT CCTAACAATGTCAATATGTTTGAATGCACTTGTTTACCTGGTTATGAACCTAGGTCTCCAGGTACCTGGCGTCTTAGGGACGGGTCTGGTGGCTGTGTTA GAAAACGACTAGAAGAAGCACCCTCCTTTTGTCAACCTGGAGAAGGGTTTTTGAGAGTGGTTGATATCAAGATTCCTGACACTTCTTCTGCCGTTTGGGT AAGCAGGAGTATGAGTCAAGTCGCATGTGAAGAAGCTTGCAGGAGAAACTGTTCCTGCTCTGCTTATTCAATGAAGTATATCGAAGGAAAACAAAGTGGC TGTTTGGCATGGTATGGGGAACTCAATGACACAGTTGTTTTTAAGGACAGTGGCGATGATCTGTTTGTAAGAGTTGATGCACGTGAATTGGCTGATAGCA TGAGAAAATTTTCTGGTGATGTTGAGGTTAAGGTTAAGCTGGCAATTGCTGTACCGTCTGTTGCTTCAGTCTTGCTTGCCATGACGATATTTGGCTATTT CCGGCTCCGGAGATGGAAACGAGAGAAAGGTAAGAATCCGAGAGCAGCCAAGAGCAATTGGATCAAAAAAATATTCGATCCTGCTGGCATTCCGAATTCC TCCAACGGTAGTTTGGCTGCAACCGTGCTTGGAGAAAACACCATTTACCCGGAGCTACCATTTTATGATTTAGGTTCCATTTTAACAGCCACCAGTAATT TCTCCCCCGCTAACAAAATTGGACAAGGTGGTTTTGGGACGGTTTACAAGGGTCAGCTCTCTAATGGGCAAGAGGTGGCTGTGAAAAGACTATCCACAAG TTCAGGTCAAGGGATCCAAGAACTTAAGAATGAAGTGTTGTTGATAGCCAGGCTACAACACAGAAACCTTGTGAAGCTTCTCGGGTGCTGCATTGAGGAT GACGAACAGATACTTGTTTATGAGTACGTACCCAACAAAAGCTTGGACTCCTTTATTTTTGATGAAACAAAGAGGCCATTGTTGGATTGGGGAACACGCT TCAATATCCTTGTGGGTATCGCTCGTGGGATCTTATATCTTCATCAAGACTCAAGATTCAGAATAATACATAGAGATCTGAAAAGCAGCAACATTCTCTT GGATGAGATGATGAACCCTAAAATCTCAGACTTCGGCTTGGCTAAGATGTTTGATTGTGAGCAGACGCAAAACAAGACGACCAGAGTTGTCGGAACATAT GGCTACATGTCACCGGAATATGCAGTATTCGGGAAATTTTCGGTGAAATCTGATGTTTTTAGCTTTGGGATCGTACTCCTCGAGGTATTCAGTGGCAAGA AGATCAATAGCTTTTCGCAGGAGGTACCGCCCCGGACATTGATAGGACATGTATGGGGACTATGGAGGGAGAACAGAGTGCTGGAGTTGATGGATCCTTC GGTGAAGGAGTCTTGTGTTCCCGAGGAAGCACTGCGTTGCGTCCATGTTGGACTGTTATGTGTTCAGGAAGATGCAACAGATAGGCCAAACATGTCAGCT GTTGTGTTGATGTTGACTAGTGAGACGCCTCTTCCACGGCCGAAACAGCCAGCTTTTGTTTTCAGAGTCGTCGATTCCAAGTTGGTAATGGCAGGTGGTG CGGATGAACCTTGTTCCATTAACGACTTGACTCTAACTGGGGTCTTGTCGCGGTGA
AA sequence Show only first row Show all	>Lus10024064 pacid=23141560 polypeptide=Lus10024064 locus=Lus10024064.g ID=Lus10024064.BGIv1.0 annot-version=v1.0 MKGFRIGGRYVLITLFLILKILLYTTIARDTLEVTQTIEDGSTLISNGGNFALGFFSPESSSSNRYLGIWYHKVTVQTVVWVANRNSPITGTSGVLSLDG YGGLVLYSSNNDQRAPVWSANASHLALDTYAAQLLDSGNLVLLQGTQRRIVWQSFDYPTDAALPGMKIGLNLKTGLDSSLTSWRSSNDPGIGDYSFKLDP NGSPQFFLQSRGNHYWRSGPWPWGKFPDIYNYTFVNNEDEIYFSFSVNDKSLLLRTVVDYSGIMKRLSWHENEGQWNEYWSAPKYRCDSYGQCGVYSICD PNNVNMFECTCLPGYEPRSPGTWRLRDGSGGCVRKRLEEAPSFCQPGEGFLRVVDIKIPDTSSAVWVSRSMSQVACEEACRRNCSCSAYSMKYIEGKQSG CLAWYGELNDTVVFKDSGDDLFVRVDARELADSMRKFSGDVEVKVKLAIAVPSVASVLLAMTIFGYFRLRRWKREKGKNPRAAKSNWIKKIFDPAGIPNS SNGSLAATVLGENTIYPELPFYDLGSILTATSNFSPANKIGQGGFGTVYKGQLSNGQEVAVKRLSTSSGQGIQELKNEVLLIARLQHRNLVKLLGCCIED DEQILVYEYVPNKSLDSFIFDETKRPLLDWGTRFNILVGIARGILYLHQDSRFRIIHRDLKSSNILLDEMMNPKISDFGLAKMFDCEQTQNKTTRVVGTY GYMSPEYAVFGKFSVKSDVFSFGIVLLEVFSGKKINSFSQEVPPRTLIGHVWGLWRENRVLELMDPSVKESCVPEEALRCVHVGLLCVQEDATDRPNMSA VVLMLTSETPLPRPKQPAFVFRVVDSKLVMAGGADEPCSINDLTLTGVLSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10024064 [exp]	0	1
AT2G23140			RING/U-box superfamily protein...		Lus10019308 [exp]	2.4	0.8644
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026123 [exp]	4.7	0.8533
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10040937 [exp]	9.9	0.8786
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	17.9	0.8750
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Lus10001378 [exp]	19.0	0.8646
AT1G69550			disease resistance protein (TI...		Lus10001788 [exp]	20.7	0.8616
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10005944 [exp]	22.4	0.8715
AT5G16810			Protein kinase superfamily pro...		Lus10016488 [exp]	23.7	0.8651
AT2G03810			18S pre-ribosomal assembly pro...		Lus10026682 [exp]	24.3	0.8478
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10009828 [exp]	27.1	0.8520

Compare expression of checked genes

Lus10024064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.