Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44640 511 / 3e-178 BGLU13 beta glucosidase 13 (.1) AT5G42260 509 / 2e-177 BGLU12 beta glucosidase 12 (.1) AT2G44450 502 / 1e-174 BGLU15 beta glucosidase 15 (.1) AT2G44480 501 / 4e-174 BGLU17 beta glucosidase 17 (.1.2) AT3G60130 500 / 5e-174 BGLU16 beta glucosidase 16 (.1.2.3) AT1G51470 494 / 2e-171 TGG5, BGLU35 THIOGLUCOSIDE GLUCOHYDROLASE 5, beta glucosidase 35 (.1) AT1G47600 489 / 7e-170 BGLU34, TGG4 THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2) AT3G60140 488 / 2e-168 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G24550 483 / 4e-167 BGLU32 beta glucosidase 32 (.1) AT2G25630 473 / 9e-164 BGLU14 beta glucosidase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026057 [exp] 729 / 0 AT2G44450 554 / 0.0 beta glucosidase 15 (.1) Lus10036445 [exp] 582 / 0 AT2G44450 506 / 8e-176 beta glucosidase 15 (.1) Lus10012687 [exp] 561 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 549 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10019531 [exp] 548 / 0 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 545 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 544 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 540 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10008503 [exp] 528 / 0 AT2G44450 489 / 2e-169 beta glucosidase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015100 [exp] 561 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 555 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G227300 [exp] 550 / 0 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.T085301 [exp] 545 / 0 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 543 / 0 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G227200 [exp] 534 / 0 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.008G094200 [exp] 484 / 1e-167 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.001G222904 [exp] 479 / 2e-165 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223300 [exp] 478 / 3e-165 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227400 [exp] 475 / 5e-165 AT2G44480 513 / 3e-180 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10024065 pacid=23141483 polypeptide=Lus10024065 locus=Lus10024065.g ID=Lus10024065.BGIv1.0 annot-version=v1.0 ATGGGATTCCAAGAACATAGCCGCTGCAGTCTCTTCTTCAAATCATCGATTCTATGCTTATTGTTCGTCGTCGTCGTTGTCGCAATCTCCAGTCTTCCAA ATCATGCATCAGCGTCCCCTCCTGCACGCAGCCAGTTCCCTCCAGATTTCATCTTTGGGGCCGCCAACTCAGCTTATCAAACTGAAGGTGCAGCAATGGA AGATGGTAAAGGACAAAGCATATGGGATTTCTATACACATAAGCATCCAGAAAGAATAACTGATAGAAGCAATGGCGATTTAGCTGCTGATTCTTACCAT TTATACAAGACAGACATACAGCTTGTGAAGGACATGGGTATGCAAGCATACAGAATATCAATTTCCTGGCCAAGGATATTACCAACTGGTCGCGGGCGTG TGAATCAAAAAGGGGTCCAATTCTACAGCGACATGATAAACGAGATGTTAGCTCAAGGAGTGACGCCTTTCGTCACTCTCTTCCACTGGGATCTTCCCCA GCCTTTACAAGAGGAATACGGCGGCTTCTTGAGTGATCGCATTGTGGCCGATTACCGAGACTATGTTGACGTTTGTTTCAAAGAATTTGGAGATCGAGTG AAGCATTGGATCACACTCAACGAACCACATTCGCTAGCAACTGGGGGTTATTCGCAAGGCAACGCTGCTCCAGGGAGATGCACGAACACTCATGGAAGAA ATTGCGACGCTGGAGATTCAGCCATCGAGCCTTATATTGTTGGCCACAACCAACTCCTTGCTCATGCCGCTGCGGTTCAGCTGTACAGAGAAAAGTACCA GGCGAGTCAAAAGGGCATGCTTGGAATAACATTAAACTCACTGTGGTTCGTTCCACTAGACCCCAAAAACCCGCTAGATGTTGCAGCTGTCACAACAGCA ATGGACTTTATGTTGGGCTGGATGCTGAACCCGATAGTGAGAGGGGAGTACCCGGAATCGATGAGGAAGCTGGTCGGAGAGCGGCTCCCGAAGTTCACAC CAGAGGAAGCTAAAGTGCTTAAAGGCTCGATTGATTTCCTAGGAGTGAACTATTACACTGCACGCTTCGCCTGTCATATTCCTAATGAAACGTTTGCTCC CGACTTTAAGTTTGACTCACAAATCGGTAAAGATAACAATGGCATGCCACTTGGCAAACCGACTGGTGCAGAATGGCTTTGCATTTATCCGGAAGGATTC ACTGCGTTGCTGCTCTACATAAAGAACAATTACGATAATCCTCCCATGTTTATAACCGAAAATGGGGCTGCAGACGACGGTAAATATTTGGATACCAAAC CAGGAGAAGCACGCCAAGACACCATACGGATTGAGTATTTTACTACCCATCTTACTCACTTAAACATGGCCATGAAGGAAGGAGCCAATGTAAAAGGATA CTTTGCATGGTCTCTGCTCGACAACTTCGAATGGGGAGACGGCTATACGGTGCGGTTCGGATTGTATTACGTGGACTTCAAAAGCCCATTCACCCGAAGC CCAAAGCAGTCAGCCTTGTGGTTTAAAGAGTTTATGACAACTTCAAACGCTTAG
AA sequence Show only first row Show all	>Lus10024065 pacid=23141483 polypeptide=Lus10024065 locus=Lus10024065.g ID=Lus10024065.BGIv1.0 annot-version=v1.0 MGFQEHSRCSLFFKSSILCLLFVVVVVAISSLPNHASASPPARSQFPPDFIFGAANSAYQTEGAAMEDGKGQSIWDFYTHKHPERITDRSNGDLAADSYH LYKTDIQLVKDMGMQAYRISISWPRILPTGRGRVNQKGVQFYSDMINEMLAQGVTPFVTLFHWDLPQPLQEEYGGFLSDRIVADYRDYVDVCFKEFGDRV KHWITLNEPHSLATGGYSQGNAAPGRCTNTHGRNCDAGDSAIEPYIVGHNQLLAHAAAVQLYREKYQASQKGMLGITLNSLWFVPLDPKNPLDVAAVTTA MDFMLGWMLNPIVRGEYPESMRKLVGERLPKFTPEEAKVLKGSIDFLGVNYYTARFACHIPNETFAPDFKFDSQIGKDNNGMPLGKPTGAEWLCIYPEGF TALLLYIKNNYDNPPMFITENGAADDGKYLDTKPGEARQDTIRIEYFTTHLTHLNMAMKEGANVKGYFAWSLLDNFEWGDGYTVRFGLYYVDFKSPFTRS PKQSALWFKEFMTTSNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Lus10024065 [exp]	0	1
					Lus10026794 [exp]	1.4	0.8799
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	2.4	0.9066
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Lus10004538 [exp]	3.3	0.8137
AT1G26140			unknown protein		Lus10034406 [exp]	4.2	0.8198
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	6.7	0.8738
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019182 [exp]	9.2	0.7839
AT5G03980			SGNH hydrolase-type esterase s...		Lus10009325 [exp]	11.0	0.8528
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	13.2	0.8437
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	14.4	0.8533
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	17.4	0.7897

Compare expression of checked genes

Lus10024065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.