Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80760 377 / 3e-132 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT4G10380 306 / 4e-104 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT5G37820 195 / 5e-61 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT4G18910 194 / 2e-60 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT4G19030 194 / 2e-60 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT5G37810 192 / 6e-60 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT1G31885 191 / 8e-59 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT2G34390 171 / 2e-51 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT3G06100 151 / 3e-44 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT3G16240 98 / 5e-24 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041674 [exp] 346 / 1e-121 AT1G80760 283 / 5e-97 NOD26-like intrinsic protein 6;1 (.1) Lus10033268 [exp] 322 / 3e-110 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10041675 [exp] 317 / 6e-110 AT1G80760 247 / 9e-83 NOD26-like intrinsic protein 6;1 (.1) Lus10010153 [exp] 311 / 5e-106 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10017358 [exp] 307 / 2e-104 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10029274 [exp] 198 / 4e-62 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10035999 [exp] 192 / 6e-60 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10020929 [exp] 176 / 2e-53 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10007322 [exp] 164 / 3e-50 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G180900 [exp] 426 / 1e-151 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G046800 [exp] 424 / 9e-151 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G455000 [exp] 306 / 3e-104 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G146900 [exp] 298 / 3e-101 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.004G063000 [exp] 205 / 5e-65 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.011G072100 [exp] 203 / 4e-64 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 192 / 5e-60 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G083300 [exp] 188 / 2e-58 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.017G128200 [exp] 178 / 1e-54 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.002G097000 [exp] 174 / 6e-53 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10024066 pacid=23141566 polypeptide=Lus10024066 locus=Lus10024066.g ID=Lus10024066.BGIv1.0 annot-version=v1.0 ATGTTTGACCCATCAGCACCCTCCACTCCAGCAACTCCAGGCGCCCCTCTCTTCAAATCCGGTACCAGCAGGAAGCCAACAACTCCTTCCCTTCTCAGGA ACTTGAGCTGCTTCACCGTCGATGATTGGTCGGTCGAGGAAGGCCGCTTGCCTCCCGTCTCCTGCTCTAATTTCTCCCCTCCTCCCATTTCCCTCGCTCG CAAGGTGGGAGCGGAGTTCATAGGCACTCTGATCCTGATATTCGCCGGGACAGCAACAGCTATCGTGAACCAGAAAACAGGAGGGTCGGAGACTTTGATA GGACTGTCGGCGTCCACCGGACTTGCGGTTATGGTGGTGATTCTGTCGACGGGGCACATCTCAGGGGCCCACCTCAACCCTGCCGTTACCATTGCATTCG CTTCCGTCAGACACTTCCCCTGGAGGCACGTCCCCGTCTACATTGCTGCTCAAGTGGTGGCGTCCACGTGCGCCGCCTTCGCCCTGAAGGGGGTTTTTCA TCCGGTGATGGACGGCGGGGTAACGGTTCCTTCCGGAAATCACGCCCAGGCGTTTGCTTTGGAGTTCATTATTAGTTTCATTCTCATGTTTGTCGTTACC GCCGTCGCCACCGACACCAGAGCTGTAGGGGAGCTGGCCGGAATAGCTGTAGGGGCAACTGTAATGCTCAACATACTTATTGCTGGGAACACGACAGGCG CTTCCATGAACCCGGTGAGAACTTTGGGGCCTGCCATTGCGGCTAACAACTACACGGCTATATGGATTTACCTCACTGCCCCCATTCTTGGGGCACTCTG TGGAGCAGGGACTTATGTTGCTGTTAAGCTGCCTGAGGAGGACGGTGATCATATTCATCACAAGTCATCCACATCCAGGAGCTTCACAAGATGA
AA sequence Show only first row Show all	>Lus10024066 pacid=23141566 polypeptide=Lus10024066 locus=Lus10024066.g ID=Lus10024066.BGIv1.0 annot-version=v1.0 MFDPSAPSTPATPGAPLFKSGTSRKPTTPSLLRNLSCFTVDDWSVEEGRLPPVSCSNFSPPPISLARKVGAEFIGTLILIFAGTATAIVNQKTGGSETLI GLSASTGLAVMVVILSTGHISGAHLNPAVTIAFASVRHFPWRHVPVYIAAQVVASTCAAFALKGVFHPVMDGGVTVPSGNHAQAFALEFIISFILMFVVT AVATDTRAVGELAGIAVGATVMLNILIAGNTTGASMNPVRTLGPAIAANNYTAIWIYLTAPILGALCGAGTYVAVKLPEEDGDHIHHKSSTSRSFTR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10024066 [exp]	0	1
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	3.2	0.8046
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10000280 [exp]	8.8	0.7562
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10030308 [exp]	9.3	0.7884
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10025738 [exp]	10.2	0.7359
AT5G10550		GTE2	global transcription factor gr...		Lus10020471 [exp]	10.5	0.7738
AT1G11930			Predicted pyridoxal phosphate-...		Lus10015557 [exp]	14.5	0.7292
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10002865 [exp]	15.7	0.7743
AT1G11930			Predicted pyridoxal phosphate-...		Lus10020039 [exp]	18.7	0.7577
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10007347 [exp]	19.1	0.7868
AT4G01200			Calcium-dependent lipid-bindin...		Lus10008731 [exp]	21.1	0.7620

Compare expression of checked genes

Lus10024066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.