Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15950 532 / 0 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G80820 502 / 1e-177 CCR2, ATCCR2 cinnamoyl coa reductase (.1) AT5G19440 320 / 3e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 297 / 2e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 285 / 2e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 275 / 2e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 273 / 3e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33590 273 / 3e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 272 / 1e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G66800 269 / 2e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041651 [exp] 664 / 0 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10030973 [exp] 504 / 3e-178 AT1G15950 457 / 1e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10035369 [exp] 492 / 1e-173 AT1G15950 456 / 6e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10009955 [exp] 315 / 2e-104 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026385 [exp] 303 / 9e-100 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 303 / 1e-99 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 277 / 2e-89 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 276 / 3e-89 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012930 [exp] 263 / 1e-84 AT2G33590 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181400 [exp] 561 / 0 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 560 / 0 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 558 / 0 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 558 / 0 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045000 [exp] 545 / 0 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 536 / 0 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045800 [exp] 392 / 3e-135 AT1G15950 350 / 1e-121 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G256400 [exp] 316 / 8e-105 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 311 / 1e-102 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 303 / 1e-99 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family CL0431 [flax] [poplar] PF PF04628 [flax] [poplar] Sedlin_N Sedlin, N-terminal conserved region
Representative CDS sequence Show only first row Show all	>Lus10024068 pacid=23141549 polypeptide=Lus10024068 locus=Lus10024068.g ID=Lus10024068.BGIv1.0 annot-version=v1.0 ATGGCGACCACTGCTTGTTTTATCATCGTCAGCCGGAACGATATCCCCATATACGATGCTGAAGTTGGAACTGCTACTAAAAGAGAGGATGCTGCTCAGT TGCATCAGTTTGTGTTGCATGCAGCGTTGGATATTGTTCAGGACTTAGCTTGGACCACTAGTGCCATGTTCTTGAAGAATATTGACAGGTTCAATGACCT GGTGGTATCAGTTTATGTCACTGCTGGCCTGGACTGGTCATCCGGTCTGGTCTACCTTAATTTACCGGTGGTAGGTAAGGCGAGTATACACGCGCTCTGC TCCCTCGTCCAGAGGACCATTATTATAAGTATAGAAGATAGACCCACTCACTTTCTCGCCAACCCACTACACAACACCGCGCTGATTCCTCCTCCCATTC CGACGACCAATTCAGCTTTCCCCCCTTTCCCTGCCTCCTTCCTCCTCATCCTTTCATCCCAAAAAATCAACTTGTCACAAACAACGATGCCGGCTGACAG CTCATCCTTCCCCGGCCACGGCCACACCATCTGCGTCACCGGCGCCGGCGGCTTCATTGCCTCATGGATGGTTAAACTTCTTCTCGAAAGAGGCTACTCC GTCAAAGGAACTGTCAGGAATCCAGATGATCCGAAGAACAGTCATCTGAGAGAACTGGAAGGAGCGAGCGAGCGGCTAACTCTGTGCAAAGCCGATCTTC TCGACTATGAGAGCCTCCGAGAAGCCATTGCCGGCTGCCAGGGTGTTTTCCACACCGCTTCCCCTGTCACCGATGATCCAGAACAAATGGTGGAGCCGGC TGTGGTTGGTACGAACAATGTAATAAATGCTGCATCTGAAGCCAAAGTCCGGCGGGTTGTCTTCACGTCATCAATTGGCGCTGTCTACATGGACCCCAAC CGGAGCCCGGACGTTGTCGTCGATGAATCGTGTTGGAGCGATCTGGAATTTTGCAAAAACACCAAGAATTGGTACTGTTATGGGAAGATGGTGGCGGAGC AGGCGGCGTGGGAGACTGCTAAAGAGAAGGGAGTGGATGTAGTGGCGGTGAACCCTGTTCTGGTAATGGGACCATTGTTGCAATCAACCATCAACGCCAG CACAATTCACATCCTCAAGTACCTAACTGGTTCGGCAAAGACTTACGCCAATTCGGTGCAAGCCTATGTTGATGTCAGGGACGTGGCACTAGCTCACATC ATCGTCTTCGAGAACCCGGCGGCCTCCGGCCGGTACCTCTGCGCCGAGAGTGTTCTCCACCGTGGCGAGGTTGTCGATATCCTTGCCAAGTTATTCCCCG AGTATCCCGTCCCCACCAAGTGTTCAGATGAGAAGAACCCAAGAGCAAAGCCCTACAAGTTCTCGTGCCAAAAACTGAAGGACCTGGGACTGGAATTCAC ACCAACAAAGCAGAGTCTGTATGAAGCAGTCAAGTCCCTTGAGGAAAAGGGTCATCTTTCTCCCCCTAAACAGCAGCAGCAGCAGCACAAGGAGGAGGAA CCCATCAAAATTCAGTCCTCTTCTTAA
AA sequence Show only first row Show all	>Lus10024068 pacid=23141549 polypeptide=Lus10024068 locus=Lus10024068.g ID=Lus10024068.BGIv1.0 annot-version=v1.0 MATTACFIIVSRNDIPIYDAEVGTATKREDAAQLHQFVLHAALDIVQDLAWTTSAMFLKNIDRFNDLVVSVYVTAGLDWSSGLVYLNLPVVGKASIHALC SLVQRTIIISIEDRPTHFLANPLHNTALIPPPIPTTNSAFPPFPASFLLILSSQKINLSQTTMPADSSSFPGHGHTICVTGAGGFIASWMVKLLLERGYS VKGTVRNPDDPKNSHLRELEGASERLTLCKADLLDYESLREAIAGCQGVFHTASPVTDDPEQMVEPAVVGTNNVINAASEAKVRRVVFTSSIGAVYMDPN RSPDVVVDESCWSDLEFCKNTKNWYCYGKMVAEQAAWETAKEKGVDVVAVNPVLVMGPLLQSTINASTIHILKYLTGSAKTYANSVQAYVDVRDVALAHI IVFENPAASGRYLCAESVLHRGEVVDILAKLFPEYPVPTKCSDEKNPRAKPYKFSCQKLKDLGLEFTPTKQSLYEAVKSLEEKGHLSPPKQQQQQHKEEE PIKIQSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	0	1
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	2.2	0.9653
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	2.4	0.9551
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	2.4	0.9561
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	2.6	0.9375
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	3.2	0.9405
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	3.5	0.9383
AT1G76140			Prolyl oligopeptidase family p...		Lus10021235 [exp]	4.6	0.9093
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	5.7	0.9329
AT1G52330			Late embryogenesis abundant (L...		Lus10011458 [exp]	7.1	0.9187
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10032998 [exp]	7.4	0.9272

Compare expression of checked genes

Lus10024068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.