Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80630 360 / 1e-118 RNI-like superfamily protein (.1) AT3G58530 82 / 7e-17 RNI-like superfamily protein (.1) AT5G27920 79 / 3e-15 F-box family protein (.1) AT4G15475 78 / 4e-15 F-box/RNI-like superfamily protein (.1) AT5G01720 75 / 5e-14 RNI-like superfamily protein (.1) AT2G25490 70 / 2e-12 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 67 / 7e-12 RNI-like superfamily protein (.1) AT5G25350 66 / 2e-11 EBF2 EIN3-binding F box protein 2 (.1) AT1G77000 64 / 9e-11 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G21410 64 / 9e-11 SKP2A F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041648 [exp] 779 / 0 AT1G80630 478 / 2e-163 RNI-like superfamily protein (.1) Lus10040998 [exp] 91 / 2e-19 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10029869 [exp] 89 / 6e-19 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10012214 [exp] 90 / 1e-18 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10001264 [exp] 89 / 2e-18 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 86 / 6e-18 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10015980 [exp] 77 / 3e-15 AT3G58530 442 / 4e-156 RNI-like superfamily protein (.1) Lus10012294 [exp] 77 / 6e-15 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10012764 [exp] 76 / 3e-14 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G179100 [exp] 481 / 3e-166 AT1G80630 494 / 1e-169 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 94 / 4e-20 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.016G128400 [exp] 89 / 2e-18 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 81 / 5e-16 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 81 / 7e-16 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 79 / 2e-15 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G088800 [exp] 76 / 9e-15 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.018G027700 [exp] 76 / 2e-14 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G022600 [exp] 74 / 8e-14 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G195800 [exp] 69 / 1e-12 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10024070 pacid=23141555 polypeptide=Lus10024070 locus=Lus10024070.g ID=Lus10024070.BGIv1.0 annot-version=v1.0 ATGGCGGAAACAAAGCCCGGTGAATTGCCTCGGGAGTGCTGGGAATTGATTGCCAATTCCCTCGATCAGAATCGATACTTCGAGTCCCTCTCCCTCGTCT CAACCCAATTCTTGTCCGCCACCGATCACCTTCGCCGTTCCCTCACGATCACTTCCCGAACAGCCCCGCCCTTGTCTCTCAACCCCGATGGATCCTTGGA TTTGCAGTACTTTGTGGCCTTCGTCACTGACGAAGGTATTGCTGATTTGTCATTGAAGCTGAGCAACTTGCAGAAGATCGACATTTCTGGTAATCAGTTC ATTACGGATAAATCACTTTCCTCTCTGTCGTTTAATTGCTCCTCCTTGGTGCAAATAATTCTGCTTGATTGCGATTTTATAACCCAGAATGGAATTGGGT TGACTCTCCGAAATGTTGTAAACTTGACGTCGGTAGCGATGGATGGAATTGGAATCCCTTCTCTGGATTCGTCTCTCAAGGAATCATTTGTCTTTGCGAA AAACGTGAGTGCGCTTCATCTGTCAAACTCGTTTTTATCGGATGAATTTCTCAGTATGATTGCAGATGCAAATCTTCCACTTCGGGACTTGACCGTATCC CATTGCTATAATTTCACTTCTGTTGGAGTTGAGACGTTGTTGCACAGATATAGGTCTCTAGTGTACTTGGATCTTGAAGGAGCAAATTTTCTCACTGACG ACTCCATGATTGAGTTATCCAACTTCCTTCCAAATTTGACTTTCATAGATCTAGGCCTATGTTCTAAGCTCACGGGGCTTACCTTCTTTACGCTTATGAA TAACTGTCCATTGCTTGAAGATGTTAGAATGGAGAGCACAAACATTGGGGTGGAAGAGTTCACGGAATTGACAGTGAAAAAATCCAAAATCAAGTTCCTG GATTTGGCTGGTAATAATAGCTTAAGTGATGAATGCCTCAAAAGGGTTGCATCCAGCTGTCCGAATCTAGAAGTGCTCAATCTCAGTTATTGTCCAAACA TCACCGAAGATGGAGTTACCGAAGTTTTGAGCAAATGTATTCGACTTAGACACCTGGAGATCAGCAGGTGTGTGGGAATAGCAAGCTTGACCATTGATTT CGAACTTCCTCGGTTGGAGGTATTGAAAGCCCAGGGATCCATATTAGACGATGAAGCATTGGGAACAATTGCAGAGAGGTGTAAAGTGATTCTGCATTTA GACTTGGAATCTTGTTTGAGCGTGTCGAAACAAGGTTTAGCTCGTGTGGTGGAAAATTGCAGGAGATTAAGGGAGATAAACCTGAGGAGTTGTGAGAATG TGGATATCCATGCTATTGCATTGATGGCATTCAGAAGGCCATCGTTGAGGAAAATAATCCCTCCCGGTGAGAATATGTTCACAGATAAGCAGATTAAGCT TTTCCTACGTCATGGATGTTCAGTTTCTGAAAGCTAG
AA sequence Show only first row Show all	>Lus10024070 pacid=23141555 polypeptide=Lus10024070 locus=Lus10024070.g ID=Lus10024070.BGIv1.0 annot-version=v1.0 MAETKPGELPRECWELIANSLDQNRYFESLSLVSTQFLSATDHLRRSLTITSRTAPPLSLNPDGSLDLQYFVAFVTDEGIADLSLKLSNLQKIDISGNQF ITDKSLSSLSFNCSSLVQIILLDCDFITQNGIGLTLRNVVNLTSVAMDGIGIPSLDSSLKESFVFAKNVSALHLSNSFLSDEFLSMIADANLPLRDLTVS HCYNFTSVGVETLLHRYRSLVYLDLEGANFLTDDSMIELSNFLPNLTFIDLGLCSKLTGLTFFTLMNNCPLLEDVRMESTNIGVEEFTELTVKKSKIKFL DLAGNNSLSDECLKRVASSCPNLEVLNLSYCPNITEDGVTEVLSKCIRLRHLEISRCVGIASLTIDFELPRLEVLKAQGSILDDEALGTIAERCKVILHL DLESCLSVSKQGLARVVENCRRLREINLRSCENVDIHAIALMAFRRPSLRKIIPPGENMFTDKQIKLFLRHGCSVSES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80630			RNI-like superfamily protein (...		Lus10024070 [exp]	0	1
AT2G43970			RNA-binding protein (.1.2)		Lus10027080 [exp]	2.0	0.8389
AT1G21830			unknown protein		Lus10025658 [exp]	4.0	0.7564
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10030422 [exp]	9.2	0.7974
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	10.0	0.8264
AT2G45980		ATI1	ATG8-interacting protein 1, un...		Lus10014767 [exp]	10.2	0.8013
AT1G32410			Vacuolar protein sorting 55 (V...		Lus10006605 [exp]	14.7	0.8191
AT3G06170			Serinc-domain containing serin...		Lus10004430 [exp]	19.0	0.7831
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	19.2	0.7993
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	19.8	0.7501
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10038218 [exp]	22.5	0.7762

Compare expression of checked genes

Lus10024070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.