Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05710 102 / 8e-29 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G31730 101 / 4e-28 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 93 / 6e-23 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 89 / 2e-22 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 83 / 2e-19 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G31050 80 / 2e-18 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G21340 79 / 3e-18 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 78 / 1e-17 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G27660 78 / 1e-17 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 76 / 5e-17 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041649 [exp] 216 / 1e-71 AT2G31730 117 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 103 / 2e-29 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 102 / 9e-29 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 98 / 2e-25 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 96 / 3e-24 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 93 / 2e-23 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10038550 [exp] 90 / 1e-21 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010638 [exp] 86 / 3e-20 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023669 [exp] 76 / 9e-17 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G126800 [exp] 106 / 3e-30 AT1G05710 192 / 4e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.019G112000 [exp] 102 / 6e-29 AT1G05710 180 / 2e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G410600 [exp] 96 / 7e-24 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G094300 [exp] 91 / 3e-23 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 90 / 7e-23 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 92 / 1e-22 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 91 / 4e-22 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G129500 [exp] 90 / 5e-22 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 85 / 1e-20 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G032400 [exp] 86 / 2e-20 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024071 pacid=23141577 polypeptide=Lus10024071 locus=Lus10024071.g ID=Lus10024071.BGIv1.0 annot-version=v1.0 ATGATGTTGAAAAGCAAGCGACCATCCTCCACAAGCTCCTTCCAGAACACCAAACGGATGAAGCCCGACGACCACCATCCAAACTCTAGGAAAGACAAGC AGCTCGGGGACCGAATCGTGGGACTACAGCAGCTTGTTTCTCCATATGGAAAGACCGATACTGCCTCTGTTCTTCAAGAAGCCATCGACTACATCTCCTT CCTTCATCAGCAGCTTAAGGTCTTGAGCTCCCCTTATCTCCTCTCTTCCTCTTCTGCAACAATCAACCACGATTGGATCGAGAACTCTGCAGGTGCTCTT CGAAGCAGAGGGCTTTGTCTCGTCCCGCTGGATGCCACCGCTGTTATTGATCATGGCGCCAATGGAGCGGATCTTTGGGCTCCAACAACCTCTACTTAA
AA sequence Show only first row Show all	>Lus10024071 pacid=23141577 polypeptide=Lus10024071 locus=Lus10024071.g ID=Lus10024071.BGIv1.0 annot-version=v1.0 MMLKSKRPSSTSSFQNTKRMKPDDHHPNSRKDKQLGDRIVGLQQLVSPYGKTDTASVLQEAIDYISFLHQQLKVLSSPYLLSSSSATINHDWIENSAGAL RSRGLCLVPLDATAVIDHGANGADLWAPTTST

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	0	1
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	1.4	0.9176
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	2.0	0.9156
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	2.2	0.9036
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	4.9	0.8787
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10028102 [exp]	5.7	0.9076
					Lus10023010 [exp]	6.0	0.9067
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	7.7	0.8647
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	9.2	0.8995
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	9.5	0.9004
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	9.7	0.8648

Compare expression of checked genes

Lus10024071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.