Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002303 [exp] 38 / 0.0008 ND / Lus10041649 [exp] 0 / 1 AT2G31730 117 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024072 pacid=23141489 polypeptide=Lus10024072 locus=Lus10024072.g ID=Lus10024072.BGIv1.0 annot-version=v1.0 ATGGCGGCTAGTAATGTGAAAGCAGTTGCTGCGTTTGCAGTGATGATGATGATGATGATGAGCATGCTAACAGTCATAGCAGCAGCAGCAGCAGTGAGCG AGATCGAAGTGCAGTGCAACCACAAATCAGTAGCGAATAACAACGTTGTGGCGGCGAGCATAGCCCGAGGCACCCTTCAAATGGTAAACGAGACCCCAAA CAGCTCCCATCATCGGACAGACATCACAGGTGAAGTACACGCCACCGGATTTGCAACTTGTTCTTCATCTGGGAATGCTTGCCATTCCTGCCTGCTCGGG ATTGTGAATGCTCTGAGTGAAAAATGCTTCAACGGAATTGCAGCAACAGCCACTTCCCCTGATGGCTGCTTCCTCAAATATAAAGGCCTCGACTACCCCA ACTTAATTAATTAA
AA sequence Show only first row Show all	>Lus10024072 pacid=23141489 polypeptide=Lus10024072 locus=Lus10024072.g ID=Lus10024072.BGIv1.0 annot-version=v1.0 MAASNVKAVAAFAVMMMMMMSMLTVIAAAAAVSEIEVQCNHKSVANNNVVAASIARGTLQMVNETPNSSHHRTDITGEVHATGFATCSSSGNACHSCLLG IVNALSEKCFNGIAATATSPDGCFLKYKGLDYPNLIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024072 [exp]	0	1
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10029445 [exp]	16.3	0.6214
AT4G28650			Leucine-rich repeat transmembr...		Lus10014243 [exp]	22.2	0.6373
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10020148 [exp]	27.7	0.6246
AT4G18260			Cytochrome b561/ferric reducta...		Lus10042834 [exp]	82.3	0.5721
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10015195 [exp]	94.5	0.5635
AT3G23130	C2H2ZnF	FLO10, FON1, SU...	SUPERMAN, FLORAL ORGAN NUMBER ...		Lus10022206 [exp]	137.3	0.5759
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Lus10003458 [exp]	137.3	0.5444
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10041463 [exp]	150.2	0.5417
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10020147 [exp]	162.9	0.5464
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Lus10004231 [exp]	253.1	0.5318

Compare expression of checked genes

Lus10024072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.