Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19780 891 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT5G57940 873 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G23980 869 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G15990 868 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT4G30560 848 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G53130 651 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G01340 649 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT4G01010 629 / 0 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT2G24610 620 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT2G28260 620 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041662 [exp] 1260 / 0 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10022155 [exp] 891 / 0 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10036260 [exp] 880 / 0 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10019014 [exp] 679 / 0 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10003395 [exp] 657 / 0 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10014925 [exp] 639 / 0 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10038815 [exp] 628 / 0 AT5G53130 971 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10021461 [exp] 619 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 612 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183000 [exp] 1019 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 989 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.018G106100 [exp] 917 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.015G019100 [exp] 679 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.012G002200 [exp] 677 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.002G170000 [exp] 643 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.014G097900 [exp] 634 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.018G097600 [exp] 610 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.009G010700 [exp] 609 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G009200 [exp] 584 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024073 pacid=23141506 polypeptide=Lus10024073 locus=Lus10024073.g ID=Lus10024073.BGIv1.0 annot-version=v1.0 ATGGATCCCGGCACGATTAAAAGGAAGAGAGTACGTTTCAACCTAAAAGGGGTCCTCTTTGGTGGGACTGGTGGACGCAGGTATTCATCCAGATCATTGA GATTCGAGGTGAAGAGAGGATCCGAAAACCTGCTAACCATCGGCCGGTCCCTCAAAAGTAATGTCACCCGAGCTGTGTTCCCGGAAGACCTCAAAGTTTC GGAAAAGAGGATCTTTGATCCTCAGGACACCTCATTGCTGCTGTGGAACAGGATGTTTGTGATATCGTGCATCGTTTCGGTGTCGATCGACCCTCTCTAC TTTTACCTCCCTGTATTCAACTATTCCATGAGTTGCCTTGGTATGGACACACAATTGGCAGAGACCATCCTGACAGCAAGGACGGTGCTTGATATGTTCC ATCTGCTTCGCATGGCTCTGCAGTTCCGAACAGCCTTTGTAGCGCCATCTTCTCGTGTTTTTGGAAGAGGTGAACTTGTCATAGATCCTGCACAGATAGC TGCCAGATACCTGCAGCGGTATTTCATTGTTGATTTCCTCTCCATTTTGCCACTTCCCCAGATTGTGGTATGGAAATATCTCCACAACAAGAAGAAGGGT TCAGAAGTGTTGGCAACAAAACAGGCACTGTTGTACATAGTGTTCCTTCAATACATACCTAGGTTTACTCGCTTCTTCCCTCTTATATCAGACCTCAAAA AGACGGCAGGTGTCTTTGCGGATAGTGCCTGGGCTGGTGCAGCCTACTACCTCCTCTGGTACCTGCTAGCTAGCCACATAGCTGGGGCGTTTTGGTACTT GCTTGCCGTGGAGAGAAAAGACACGTGTTGGAGGAAAGCATGCCTGGAGAGCGGGAAATGCAACATAGACTACCTCTATTGTGGGAACAAGGTGCTTCCA GGTTTCCATAAATGGAGAAGGGTCAGCAATAACGTTCTTGGTCGTTCCTGCGGTGTTGTTGATGATAACTCCAAGTTCAACTATGGCATATACATGCAGG CTATGTCCTCAGACATTGTTGGTTCCAGGGTCTTCGTCTCCAAGTTCTTCTACTGCTTGTGGTGGGGCCTGCAGAACTTGAGCACACTTGGTCAGGGTCT CCAAACCAGTACCTACCCTTTGGAGGTTATCTTTTCCATTTCACTAGCCATTTCCGGTCTCATTCTCTTTGCTCTTCTCATTGGAAACATGCAGACTTAC CTCCAGTCTCTGACTGTTCGTCTAGAGGAGATGAGGATCAAAAGGCGCGATTCGGAGCAATGGATGCATCACCGGCTGCTGCCTCAGGATCTCAGAGAGC GGGTAAGACGCTATGATCAGTACAAATGGCTTGAAACTCGGGGAGTTGATGAAGAAACTCTGGTCCAAAGTCTGCCAAAAGATCTTAGGAGAGACATCAA ACGCCATCTTTGTCTTAACTTAGTCAGAAGGGTCCCTCTGTTTGCCAATATGGACGAGAGGCTCCTTGACGCCATTTGCGAGAGATTAAAGCCAAGCTTG TATACAGAACATACGTACATTGTAAGGGAAGGTGATCCAGTTGATGAGATGCTCTTCATCATTCGAGGCAGGCTAGAGAGTGTGACGACAGACGGTGGAA GGAGTGGGTTTTTCAACCGAGGGCTGCTGAAAGAAGGCGACTTTTGCGGTGAGGAGCTCCTAACTTGGGCACTGGACCCCAAATCTGCAGGGAACTTGCC TTCATCAACGAGAACAGTGCAGGCGTTGACCGAAGTTGAAGCATTTGCACTAGAAGCTGAAGAGCTGAAATTTGTTGCGAGTCAATTCAGGCGACTCCAC AGTAGGCAAGTGCAGCACACCTTCCGTTTCTACTCACAACAGTGGCGGACCTGGGCAGCTTGCTTCATTCAAGCTGCATGGAGAAGAAATGCAAGGAGGA AAGCTGCAGAGACTCGTCGACTGGAGGAGGAGGAAGAAGAGAGAGAACTGTACATGAACTACTATGATGGTGAAGATGACGACGAGGATGATGATGATGA TGATGATGATGACGATGATTACGGTGATGATGTTGCATTGGTAGGAGGAAATGACAACTCCTCTAGCTTAGGAGCAACTATCCTGGCATCTCGTTTTGCA GCTAATGCACTCCGCGGAAGGAAGCTCCGAACCACATCTAGTTTGATGAATCTGCAGAAGCCACCTGAACCTGATTTCAGTTCAGATCAGTAA
AA sequence Show only first row Show all	>Lus10024073 pacid=23141506 polypeptide=Lus10024073 locus=Lus10024073.g ID=Lus10024073.BGIv1.0 annot-version=v1.0 MDPGTIKRKRVRFNLKGVLFGGTGGRRYSSRSLRFEVKRGSENLLTIGRSLKSNVTRAVFPEDLKVSEKRIFDPQDTSLLLWNRMFVISCIVSVSIDPLY FYLPVFNYSMSCLGMDTQLAETILTARTVLDMFHLLRMALQFRTAFVAPSSRVFGRGELVIDPAQIAARYLQRYFIVDFLSILPLPQIVVWKYLHNKKKG SEVLATKQALLYIVFLQYIPRFTRFFPLISDLKKTAGVFADSAWAGAAYYLLWYLLASHIAGAFWYLLAVERKDTCWRKACLESGKCNIDYLYCGNKVLP GFHKWRRVSNNVLGRSCGVVDDNSKFNYGIYMQAMSSDIVGSRVFVSKFFYCLWWGLQNLSTLGQGLQTSTYPLEVIFSISLAISGLILFALLIGNMQTY LQSLTVRLEEMRIKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEETLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSL YTEHTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSAGNLPSSTRTVQALTEVEAFALEAEELKFVASQFRRLH SRQVQHTFRFYSQQWRTWAACFIQAAWRRNARRKAAETRRLEEEEEERELYMNYYDGEDDDEDDDDDDDDDDDYGDDVALVGGNDNSSSLGATILASRFA ANALRGRKLRTTSSLMNLQKPPEPDFSSDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10024073 [exp]	0	1
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	3.0	0.8148
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	3.9	0.8053
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042903 [exp]	7.5	0.8085
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	9.2	0.7984
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10001465 [exp]	12.3	0.7411
AT5G09880			Splicing factor, CC1-like (.1)		Lus10000826 [exp]	12.4	0.7778
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10015860 [exp]	14.1	0.7088
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10014885 [exp]	15.5	0.7220
					Lus10007510 [exp]	15.9	0.7281
					Lus10011017 [exp]	16.1	0.7525

Compare expression of checked genes

Lus10024073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.