Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80840 260 / 3e-85 WRKY ATWRKY40, WRKY40 WRKY DNA-binding protein 40 (.1) AT4G31800 217 / 3e-68 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT2G25000 179 / 5e-54 WRKY ATWRKY60, WRKY60 WRKY DNA-binding protein 60 (.1) AT1G68150 110 / 5e-27 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT4G22070 109 / 4e-26 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT1G62300 108 / 1e-25 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT1G18860 107 / 1e-25 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT4G04450 106 / 4e-25 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT4G01720 103 / 2e-24 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT5G15130 102 / 1e-23 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041660 [exp] 542 / 0 AT1G80840 279 / 1e-92 WRKY DNA-binding protein 40 (.1) Lus10002309 [exp] 365 / 1e-125 AT1G80840 293 / 2e-98 WRKY DNA-binding protein 40 (.1) Lus10026082 [exp] 362 / 1e-124 AT1G80840 286 / 2e-95 WRKY DNA-binding protein 40 (.1) Lus10021554 [exp] 110 / 1e-26 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10015546 [exp] 107 / 5e-26 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10036725 [exp] 108 / 7e-26 AT5G15130 227 / 6e-68 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10023615 [exp] 108 / 7e-26 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10024246 [exp] 109 / 8e-26 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10035971 [exp] 107 / 8e-26 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G044500 [exp] 328 / 1e-111 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1) Potri.003G182200 [exp] 322 / 4e-109 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1) Potri.018G019800 [exp] 237 / 7e-76 AT1G80840 263 / 7e-87 WRKY DNA-binding protein 40 (.1) Potri.006G263600 [exp] 227 / 4e-72 AT4G31800 244 / 2e-79 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) Potri.018G019700 [exp] 140 / 3e-39 AT1G80840 137 / 9e-39 WRKY DNA-binding protein 40 (.1) Potri.014G155100 [exp] 112 / 4e-27 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.017G079500 [exp] 112 / 5e-27 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.015G064100 [exp] 109 / 4e-26 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.002G186600 [exp] 108 / 5e-26 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.014G111900 [exp] 108 / 8e-26 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10024074 pacid=23141588 polypeptide=Lus10024074 locus=Lus10024074.g ID=Lus10024074.BGIv1.0 annot-version=v1.0 ATGGACTACTCTCCATCGCTTGTCGATATCTCTCTGGATCTAAATCTCAACCCTCGCCGCCATGTCGACGACGTACCATCCACCGCCGCCGCTTCCCAGA AAAAGGAATGGAGCTTCGGCGTACTACCTGCTTCTTCCACTCCCTCCAATTTCATCGGATTAGGAATGAAGGTTTCTCCTGCTACTAAGGATGAGTATTC GTCGTCGTCATCGACTCTGGTGGAGGAATTGAACAGGGTGAGCGCGGAGAACAAGAAGCTGACCGAAATGCTTACAGTAATGTGCGAGAACTACAACGCT ATGAGGAACCAATTGATGGATTACATGTCTAGGAAGGAAGAAGATAAGGAGCAGAACAGTCCTTCTTCCCCTTCAAGGAAGAGGAAATCCGAGAGTAGCA ACACTATTACCAACAATCTCCCTGTCAACAACAACAATGGCGCCAATGGAGCTTCTGAGAGCAGCTCTACCGACGAAGAGTCCTTTAAACGGCCTCGTGA AGAAGTCATCAAGGCCAAGATCTCTAGGGTTTATGTCAGAACTGAAACTTCCGATTCCGGCCTCATTGTGAAGGATGGTTATCAATGGAGGAAATACGGG CAGAAGGTGACCAGAGATAATCCTTGCCCAAGAGCTTACTTCAAGTGTTCTTTTGCTCCCAGCTGCCCTGTTAAAAAGAAGGTTCAGAGGAGTGTGGAGG ACCAATCGGTAGTGGTTGCAACATACGAAGGAGAGCACAACCATCCTCACCCATCGGTACCAGATCAGGCAGCAACAGCATCGAGCCGTGGCTTGGCCAT TCCTGGCCCTGCCTCGCACTCTGGACCAGCGACTATGGCTGCCGATTTGGCGAAATCGAAGACCAGTCCTAGCAGTGTCAGGAATGTAGCAGCAGCAAGG AGTGTTGTTGCTACAGATACTCCAAGAGCAGCAGCAGGAGGCGATGGTCCGGAAGTTCGACAGCTTTTGGTGGAACAGATGGCAAATTCATTGACACAGG ACCCCAAATTCACAGCAGCTCTTGCTGCAGCCATCTCTGGGAAAATGCTTCAACAGAGCCATAGTCAAAAGTGGTGA
AA sequence Show only first row Show all	>Lus10024074 pacid=23141588 polypeptide=Lus10024074 locus=Lus10024074.g ID=Lus10024074.BGIv1.0 annot-version=v1.0 MDYSPSLVDISLDLNLNPRRHVDDVPSTAAASQKKEWSFGVLPASSTPSNFIGLGMKVSPATKDEYSSSSSTLVEELNRVSAENKKLTEMLTVMCENYNA MRNQLMDYMSRKEEDKEQNSPSSPSRKRKSESSNTITNNLPVNNNNGANGASESSSTDEESFKRPREEVIKAKISRVYVRTETSDSGLIVKDGYQWRKYG QKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVEDQSVVVATYEGEHNHPHPSVPDQAATASSRGLAIPGPASHSGPATMAADLAKSKTSPSSVRNVAAAR SVVATDTPRAAAGGDGPEVRQLLVEQMANSLTQDPKFTAALAAAISGKMLQQSHSQKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10024074 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10041660 [exp]	1.0	0.9686
AT5G54165			unknown protein		Lus10023231 [exp]	1.4	0.9655
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009798 [exp]	1.7	0.9563
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	2.2	0.9459
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	2.4	0.9403
AT1G29690		CAD1	constitutively activated cell ...		Lus10002768 [exp]	3.5	0.9038
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	3.7	0.9350
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10035071 [exp]	4.6	0.8819
AT2G23810		TET8	tetraspanin8 (.1)		Lus10019965 [exp]	4.9	0.9545
AT3G11760			unknown protein		Lus10013598 [exp]	4.9	0.8796

Compare expression of checked genes

Lus10024074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.