Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10930 541 / 0 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G25110 532 / 0 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT2G25090 493 / 1e-172 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G45820 469 / 1e-163 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 436 / 7e-150 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT4G30960 432 / 4e-149 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G01810 411 / 3e-141 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT1G30270 409 / 2e-139 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 401 / 8e-137 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G07070 397 / 3e-135 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041653 [exp] 637 / 0 AT5G10930 490 / 1e-173 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10007448 [exp] 555 / 0 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10024448 [exp] 551 / 0 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10022749 [exp] 460 / 4e-160 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 455 / 9e-158 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10021852 [exp] 442 / 3e-153 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 441 / 1e-152 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10042229 [exp] 439 / 2e-151 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 423 / 2e-145 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181900 [exp] 563 / 0 AT5G25110 460 / 2e-159 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.006G263500 [exp] 557 / 0 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.018G019900 [exp] 553 / 0 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.006G186200 [exp] 463 / 2e-161 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.016G133500 [exp] 461 / 3e-160 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 453 / 2e-157 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.019G048800 [exp] 453 / 2e-157 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 441 / 2e-152 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.013G156000 [exp] 440 / 4e-152 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 437 / 4e-151 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10024075 pacid=23141501 polypeptide=Lus10024075 locus=Lus10024075.g ID=Lus10024075.BGIv1.0 annot-version=v1.0 ATGGAGATTATAAAAACGGGGCCAAACAGCAGACAATCAGCAGACGGCGTCAGCCATGGAAGCAATACCGGCGGAACAGGAGGAGGAGGAAGGCGGACTC TGTTCGAGAAATACGAGATGCAGAGGTTCTTAGGCAGAGGGAACTTCGCCAAGGTGTTCAAGGCCAGGAACATTGCCAGCGGGGAAAGCGTGGCCGTGAA AGTGATGAACAAGGAGCAGCTGATGAAGACCGAGGGACTTGCTGAACGCGTGGAGAGGGAGATCTCTGTGATGCACAGGATCAAGCACCCAAACGTCGTC GAATTGAAGGAAGTCATGGCCACCAAGTCCAAAATCTTCTTCGTAATGGAGTACGTCAGAGGCGGGGAGCTGTTCGCCAAGGTCGAGAAAGGGAAGCTCG ACGAGGACGTCGCTCGCAAGTACTTCCAGCAATTGATCAGCGCAATCGATTACTGCCACAGCCGCGGCGTCTCCCATCGGGATCTGAAGCCGGAGAATCT TCTTTTGGACGAGAACGGCAATCTTAAGGTCTCCGATTTCGGCCTCTCCGCTTTGCCGGAGCAGATCTGGAACGACGGATTGCTCCACACCCAATGTGGG ACCCCTGCCTACGTGGCACCGGAGGTTCTGAGGAAAAAGGGGTACGACGGAGCTACGGCTGATATTTGGTCCTGCGGCGTAATCCTCTTCGTTCTCCTCT CCGGATACCTGCCATTCCTCCAGGAGAATCTAATGAAAATGTATGTGAAGATTTTCAAAGCTGATTACATATTTCCTACGTGGATCTCCAAGGACGCTAG GGCTTTGATCTCGAGGCATCTGGTTGTTGACGCGAGGAGGCGAATCACGATTGCAGAGATAATGGAGAATCCGTGGTTCAAGGAAGGGCTTCAGAAGCCA GTAACTGTTCCGGCGGCGTTTCCCGAAGAGGAGGAAGGAGGAGGCGGATCGTCGTCGTCTGCTTCGTCGCCGCACTCGCCGCCGTTCTTCAACGCGTTCG ATCTGATATCGTCGATGTCGTCGGGGTTCGATCTATCGAATTTGTTTGAGGAGAAGAAGAAGCCAGGGTCGATGTTTACGACGAAGTGCGCGGCGCCGGT GATAATGTCGAAGCTGGAGACGGTGGCGAAGGAGTCGAATTTCAGAGTGGTGAGCGACGAGGACCACAAGGTGAAGATACAGAGGAAGGAGGAGGGGAGG AAAGGGGTGCTGGCGGTGAAGGCGGACGTGTACTCGGTGGCTCCGGAGGTGGCGGTGGTGGAGTTCTCGAAGAGGTCAGGGGATACGCTGGAATACGAAA GGTTCTGCGAGGAGGACGTGAAGCCGGCGCTGAAGGATGTGGTATGGGCGTGGCAGGGTGAAAGCAGCGACGACGAATCGTCTCGTCATTTCTAG
AA sequence Show only first row Show all	>Lus10024075 pacid=23141501 polypeptide=Lus10024075 locus=Lus10024075.g ID=Lus10024075.BGIv1.0 annot-version=v1.0 MEIIKTGPNSRQSADGVSHGSNTGGTGGGGRRTLFEKYEMQRFLGRGNFAKVFKARNIASGESVAVKVMNKEQLMKTEGLAERVEREISVMHRIKHPNVV ELKEVMATKSKIFFVMEYVRGGELFAKVEKGKLDEDVARKYFQQLISAIDYCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQIWNDGLLHTQCG TPAYVAPEVLRKKGYDGATADIWSCGVILFVLLSGYLPFLQENLMKMYVKIFKADYIFPTWISKDARALISRHLVVDARRRITIAEIMENPWFKEGLQKP VTVPAAFPEEEEGGGGSSSSASSPHSPPFFNAFDLISSMSSGFDLSNLFEEKKKPGSMFTTKCAAPVIMSKLETVAKESNFRVVSDEDHKVKIQRKEEGR KGVLAVKADVYSVAPEVAVVEFSKRSGDTLEYERFCEEDVKPALKDVVWAWQGESSDDESSRHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10024075 [exp]	0	1
AT5G17820			Peroxidase superfamily protein...		Lus10005681 [exp]	1.0	0.9267
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10016205 [exp]	3.5	0.8992
AT5G17820			Peroxidase superfamily protein...		Lus10020311 [exp]	3.5	0.8675
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10029205 [exp]	5.7	0.8637
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	7.2	0.9131
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	7.5	0.8420
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Lus10038082 [exp]	8.2	0.8938
AT5G47390	MYB		myb-like transcription factor ...		Lus10040181 [exp]	14.8	0.8768
AT3G49070			Protein of unknown function (D...		Lus10027501 [exp]	16.5	0.7790
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	18.2	0.8596

Compare expression of checked genes

Lus10024075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.