Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 326 / 2e-105 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT2G03210 308 / 1e-98 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT2G15390 280 / 3e-88 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT1G14070 279 / 1e-87 FUT7 fucosyltransferase 7 (.1) AT1G14100 279 / 1e-87 FUT8 fucosyltransferase 8 (.1) AT1G14080 261 / 6e-81 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT1G14110 254 / 2e-78 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT2G15370 252 / 4e-77 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT2G15350 246 / 6e-76 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G74420 152 / 5e-40 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041644 [exp] 467 / 7e-161 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041645 [exp] 423 / 5e-144 AT2G03220 315 / 2e-101 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 421 / 1e-142 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10012571 [exp] 419 / 1e-141 AT2G03220 349 / 7e-114 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10026128 [exp] 375 / 1e-124 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10026125 [exp] 348 / 1e-116 AT2G03210 305 / 6e-100 fucosyltransferase 2 (.1) Lus10008693 [exp] 344 / 5e-115 AT2G03210 305 / 6e-100 fucosyltransferase 2 (.1) Lus10013549 [exp] 339 / 9e-111 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 337 / 2e-109 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191200 [exp] 377 / 3e-125 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G034100 [exp] 369 / 3e-122 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 354 / 5e-116 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 352 / 5e-114 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 346 / 1e-111 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 334 / 4e-108 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 325 / 9e-104 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10024076 pacid=23141604 polypeptide=Lus10024076 locus=Lus10024076.g ID=Lus10024076.BGIv1.0 annot-version=v1.0 ATGGAAAGAAGAAGACCACTATCGGTATTCATCGCTTCTTCCGACATGTTCACAGTTAAGGCCGCGGCGGCCGCTTTAACTGCCGCCGTTTCTCTTCTTC TCATCGTTTCCACAATTTCCCCAACTTCCTACCTTCCATTTACCAGGGTCGGCGGCTTTCCCCAGTCGAAGACTAGTCTATTTCCAGAACAATCCTGCGA CAGCCGCCACCAGCGGACTTCTTACCGCAAACACCCCAACCCAGCTCCGTCTCCTCAACTCCTCTCCAAGCTAACCGAATACGAACGTCGTCACTGCCGC TGCCGCTCGCTGTCGGAATCCTTCACCACCGATACCCAATATTACTCGGCCGCCGGTGATTGCAAATTCGTTGTGTACACGCCTTCTCAAGGGCTGGGGA ACAGAATTCTCGGCCTTTCTTCCACTTTCCTGTATGCCTTGCTGACGAACCGGGTCCTTCTGGTGGATTTCGGGTCGGATATGGAAGGTCTCTTCTGTGA ACCGTTCCAGAATTCGACCTGGCTCTTGCCTGGGAACTTCCCTTTCAAGGATGATTTCTACAGCTCCTGGTTCAGGGATGTTCACAGCTACGGGAATTTG CTGAAGAAGAAAGACAATAGTAGTAATAATACTGAAGAATTGTCATCTTCCTTGTCTCTTCTTCTCCAGATCTTTCTGGATGATAAGTACGACGATTACG ACAAGCTTTTCTTCAAAGATGAGAACCAAGGGTTTCTCCAGGGAATTCCTTTGCTTGTTCTGATTTCAGATGGGTATTTCGTGCCTTGCCTTTTCCAGAT GCAGAGTTTCAGGAACGAATTGGAGAGATTGTTTCCTGATGATGAAAAGGAGACTGTTTTCCAGCATTTGGGGAATTACCTATTCAGCCCTTCCAATCAA GCTTGGGGACTCATCACCCAATTCTACGACACTTACTTAGCAAAAGCAGAGGAGAGGATCGGGATGCAGATTAGAGTGTTCGAGCCCGAGATAACCCCGA TTCCTCTAGTCATGAACCAGATCCTATCCTGCATCCAGAAGGAGAAAATCCTACTACAACCCAACAATCAGTACTCCAAAAACCAAACATCAAAAGCTGT ACTCGTTGCGTCACTGTCTAGCAAATTTTATGTGGAGATCAAGTCCACGTTCGATGACGAAGAACGTCGGGTTGGAGTTTACAGGGCGAGCAACGAAGAG ATGCAACAGTCTAGCAGCAATTCGCACAATATGAAGGCGTGGATGGATATGTATTTGTTGAGTATGAGCGATGTGTTGATGACAAGCAGTATGTCTACAT TTGGGTATGTTGCTGCGGGTATTGGTGGAATAAGGCCATGGATTCTGACGATTCCTGATCAGTCCAAGGAACAGCAGGATCTTGTTCCTGAGCCGGCTTG TGAAAGAGGGGTTAATTTTGATCCCTGTTTTCACTTCCCGCCATGGTTTGCTTATCCTGAAGATCAACAAGACACGGTTGTTCACGGTCCTGTCACTCGG TGTGAAGATGTACCTTGGGGACTTAAGCTTGTCAATGGAGGACCAAACAGGACAGAGTGA
AA sequence Show only first row Show all	>Lus10024076 pacid=23141604 polypeptide=Lus10024076 locus=Lus10024076.g ID=Lus10024076.BGIv1.0 annot-version=v1.0 MERRRPLSVFIASSDMFTVKAAAAALTAAVSLLLIVSTISPTSYLPFTRVGGFPQSKTSLFPEQSCDSRHQRTSYRKHPNPAPSPQLLSKLTEYERRHCR CRSLSESFTTDTQYYSAAGDCKFVVYTPSQGLGNRILGLSSTFLYALLTNRVLLVDFGSDMEGLFCEPFQNSTWLLPGNFPFKDDFYSSWFRDVHSYGNL LKKKDNSSNNTEELSSSLSLLLQIFLDDKYDDYDKLFFKDENQGFLQGIPLLVLISDGYFVPCLFQMQSFRNELERLFPDDEKETVFQHLGNYLFSPSNQ AWGLITQFYDTYLAKAEERIGMQIRVFEPEITPIPLVMNQILSCIQKEKILLQPNNQYSKNQTSKAVLVASLSSKFYVEIKSTFDDEERRVGVYRASNEE MQQSSSNSHNMKAWMDMYLLSMSDVLMTSSMSTFGYVAAGIGGIRPWILTIPDQSKEQQDLVPEPACERGVNFDPCFHFPPWFAYPEDQQDTVVHGPVTR CEDVPWGLKLVNGGPNRTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024076 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10013594 [exp]	4.7	0.9680
AT2G18680			unknown protein		Lus10023204 [exp]	4.9	0.9531
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10029207 [exp]	6.3	0.9651
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	7.3	0.9631
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	8.7	0.9676
AT1G45063			copper ion binding;electron ca...		Lus10038098 [exp]	9.2	0.9550
AT3G58480			calmodulin-binding family prot...		Lus10013759 [exp]	9.5	0.9602
AT3G54200			Late embryogenesis abundant (L...		Lus10043084 [exp]	10.9	0.9560
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	12.2	0.9656
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	13.0	0.9578

Compare expression of checked genes

Lus10024076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.