Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11900 322 / 9e-98 S-locus lectin protein kinase family protein (.1) AT1G61500 321 / 9e-98 S-locus lectin protein kinase family protein (.1) AT1G61610 320 / 4e-97 S-locus lectin protein kinase family protein (.1) AT4G23180 316 / 4e-97 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 316 / 5e-97 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT1G61550 318 / 1e-96 S-locus lectin protein kinase family protein (.1) AT1G61420 317 / 3e-96 S-locus lectin protein kinase family protein (.1) AT4G21390 318 / 5e-96 B120 S-locus lectin protein kinase family protein (.1) AT4G23130 312 / 1e-95 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G03230 319 / 3e-95 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041639 [exp] 1497 / 0 AT4G11900 338 / 7e-104 S-locus lectin protein kinase family protein (.1) Lus10019061 [exp] 581 / 0 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10036314 [exp] 374 / 3e-123 AT4G23180 315 / 6e-102 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10033752 [exp] 317 / 3e-101 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10020083 [exp] 314 / 2e-99 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10023391 [exp] 333 / 8e-99 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10025784 [exp] 325 / 1e-97 AT3G16030 596 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10018408 [exp] 322 / 1e-96 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 313 / 6e-96 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111600 [exp] 702 / 0 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.018G111900 [exp] 625 / 0 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111800 [exp] 602 / 0 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111700 [exp] 602 / 0 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.001G437950 [exp] 329 / 1e-105 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.004G023550 [exp] 335 / 2e-104 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G036466 [exp] 325 / 3e-104 AT1G11340 411 / 1e-136 S-locus lectin protein kinase family protein (.1) Potri.011G027501 [exp] 333 / 5e-104 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G035850 [exp] 325 / 5e-104 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) Potri.001G441400 [exp] 337 / 8e-104 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18 CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10024081 pacid=23141557 polypeptide=Lus10024081 locus=Lus10024081.g ID=Lus10024081.BGIv1.0 annot-version=v1.0 ATGCCGAATGTCGTCACCATTCTGATGATTGCTTCTTCGCTTCTTTCTATAGCGAATGCACGCGATTTGATCAGAGGAGGGTATTGGGTTGTCTCCGATT TCGGACCTCCCGGCGTCGCCGCCGCCATCAACTCCACTCTCTACACTCACCTCATCTGCGGTTACGCAACCATCAACCAAACCACCTACCAAATCTCGAT CAGCCCATCCGACCGGCCACACTTTGCTAACTTCACCTCCGCCGTCCGCCGCCACAACCCCTCCGTCACAACCCTGTACTCAATCAGCGAGGGTGGCGAT TCCAACAACTCCGCCACGTTCTCCGCCATGCTCGGCAACTCCTCCCACCGCAAGGCTTTCATTCAGACCGCCATACAAACGGCTAGAAGGCATGGCTTCG GAGGCATTGACTTCTCCTGGTCAAACGATTCCCCTGACGACCTTGCCAACATAGGCACTCTGTTCCGAGAATGGCGCGTGCAAATCAACTCCGCCGCCGG TGGGGAAAGGAGGCTATTGTTGACGGCGGCGTTCGACTACGCGCCGGGGATGGGCGTGAGGAATTTCCCGGTGGGTTCGATTCGGCACAACTTGGATTGG GTCCACGTGATGGCGCAGAACCTGGAATCGTCGAAGGCCATGGAGCCTGACTCGCCTCTCGACGACCCGGAATTCTTGTCGGCGACGAGATTCGGAATCG AAGCGTGGATATCGGTGGGGAAGGTTCCTCCCGAGAAGCTGGTGCTTAGCCTGCCGTTGTACGGATTCGCCTGGAAATTGGCCAACCCTGCGGCGGCGGA GGGGAATTACATTGGGGCTCGGGTTAGCGGGCCGGCGGTTAACGAAGACGGAGGCGGGTTCTTGAGTTACGGAGAGATTAAGGGGATAACGAATGGGTCG GAGATATTGTACAACTCGACGTACGCGGTGAATTACTGCACGGTGAATGGCTCTGTTTCGGTGATATTTGATGGGCCGGAAGCCATTGGAGCTAAGGTTT CGTATACGACGGGGATGGATCTTGGTGGGTACTATGTTTGGCAGATACCTTTTGACTATAACGGAGAACTGGCTCTCGTTGCAGCGCAAGAGCAAGGCAA GAAACAGAGTCAACTAAAGAAGCGAGAACGGGTGTTAGCAGGGACAGCATCCGTTGCTGTATTCCTCACAATAATTTTAAGCATCGCTGCCTTTTACTGG ATCAGGATCAGGGGACTTGGAAGATTTAAGGATTATCTTCCTGTTGCAGCATTACTATCATTCGGAGGATCAGTTTCGAACCTGAGAGTCGAGGACATAG AAGGCTCCGGAGATTTTTCTCGAAACGATACGGTCCCTAATCTCAGAATCTATAGTTTCGATGAGATTAACAAGGCCACCAATGGATTCTCCCTTCAAAA TAAGCTTGGGCGTGGTGGCTATGGTCCTGTTTATAAGGGCGTTTTACCTGATGGACAAGAAATAGCAGTGAAGAAGCTATCTGAAACATCAACCCAGGGA CTGCAGGAATTCAAGAATGAAGTTCAACTTAACGCCAGGATCCAGCATGTAAATCTGGTCAGAGTTCTTGGATACTGCATCGATAATGACGAGAAGCTGC TCATCTATGAGTTCATGCCCAACAATAGCCTCGACAAATACCTCTACGACTCGGCTAAGCGGGACATTCTGGACTGGAGCAGAAGAGTGGAAATCATTCA AGGGATAACTCAAGGACTGGTGTATCTCCAGGAATATTCAAGGCTACCCATCATACATCGGGACTTGAAAGCCAGCAACATCTTGCTCGACAGTGACTTC CTCCCCAAGATATCTGACTTTGGGATTGCTAAAGTCTTCTCCAAGAATGGAGAAGAAACAAACACTGTCAGGATCGTTGGAACAATCGGATATACCCCAC CAGAATATTTCAGACAAGGAACCTACTCTGTCAAATCGGATGTTTATGGCTTTGGAATTCTACTGCTGCAGATCATCACGAGTAAGAGGGTTGCTCGGAT GTATGGCCCTGCAGGAGATTCCAGCCTTCAGGAATATGCATTTGAGGTGTGGGAAGATGGGAGAGGGATGGAGATAGTGGACTCAAGTCTGGATGACTCA TCGTCATCCTGCAAACTGCTGCCTTGCTTGAGAATTGCTTTGCTGTGTGTCCAGGACGACCCTATTGATCGACCTTCCATGCTTCAAGTAGCTTCAATGC TCAGGAACGAAACCATCGTTGGATCTCTCTTTCCAAAGAAGCCAACCTTCTCATTCAAACGGCAAGGAGATAATAATGTAGAGCTACCTGCAGTTTTGCA GCCTGAGTTTTGTTCAATAGCAGATGGCACATTTACCGAACTTGTGGGCCGATAA
AA sequence Show only first row Show all	>Lus10024081 pacid=23141557 polypeptide=Lus10024081 locus=Lus10024081.g ID=Lus10024081.BGIv1.0 annot-version=v1.0 MPNVVTILMIASSLLSIANARDLIRGGYWVVSDFGPPGVAAAINSTLYTHLICGYATINQTTYQISISPSDRPHFANFTSAVRRHNPSVTTLYSISEGGD SNNSATFSAMLGNSSHRKAFIQTAIQTARRHGFGGIDFSWSNDSPDDLANIGTLFREWRVQINSAAGGERRLLLTAAFDYAPGMGVRNFPVGSIRHNLDW VHVMAQNLESSKAMEPDSPLDDPEFLSATRFGIEAWISVGKVPPEKLVLSLPLYGFAWKLANPAAAEGNYIGARVSGPAVNEDGGGFLSYGEIKGITNGS EILYNSTYAVNYCTVNGSVSVIFDGPEAIGAKVSYTTGMDLGGYYVWQIPFDYNGELALVAAQEQGKKQSQLKKRERVLAGTASVAVFLTIILSIAAFYW IRIRGLGRFKDYLPVAALLSFGGSVSNLRVEDIEGSGDFSRNDTVPNLRIYSFDEINKATNGFSLQNKLGRGGYGPVYKGVLPDGQEIAVKKLSETSTQG LQEFKNEVQLNARIQHVNLVRVLGYCIDNDEKLLIYEFMPNNSLDKYLYDSAKRDILDWSRRVEIIQGITQGLVYLQEYSRLPIIHRDLKASNILLDSDF LPKISDFGIAKVFSKNGEETNTVRIVGTIGYTPPEYFRQGTYSVKSDVYGFGILLLQIITSKRVARMYGPAGDSSLQEYAFEVWEDGRGMEIVDSSLDDS SSSCKLLPCLRIALLCVQDDPIDRPSMLQVASMLRNETIVGSLFPKKPTFSFKRQGDNNVELPAVLQPEFCSIADGTFTELVGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61500			S-locus lectin protein kinase ...		Lus10024081 [exp]	0	1
AT1G65870			Disease resistance-responsive ...		Lus10029306 [exp]	11.8	0.8413
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10032346 [exp]	12.4	0.8699
AT5G26250			Major facilitator superfamily ...		Lus10002452 [exp]	13.0	0.8432
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023035 [exp]	14.4	0.8844
AT5G23100			Protein of unknown function, D...		Lus10038951 [exp]	14.6	0.8147
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	21.4	0.7748
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Lus10014932 [exp]	21.5	0.8134
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10006446 [exp]	22.0	0.8663
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	26.7	0.8194
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	33.2	0.8620

Compare expression of checked genes

Lus10024081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.