Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12480 71 / 2e-14 CCAAT NF-YC11 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) AT5G19490 62 / 2e-11 CCAAT Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041638 [exp] 254 / 2e-85 AT3G12480 204 / 9e-65 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10008701 [exp] 165 / 2e-50 AT3G12480 194 / 8e-61 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10026118 [exp] 140 / 3e-40 AT3G12480 181 / 9e-56 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10026780 [exp] 64 / 1e-11 AT5G19490 189 / 1e-58 Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192100 [exp] 156 / 2e-46 AT3G12480 224 / 4e-72 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.001G033200 [exp] 150 / 2e-44 AT3G12480 221 / 7e-71 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.001G225400 [exp] 70 / 8e-14 AT3G12480 180 / 1e-54 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.009G022050 [exp] 69 / 1e-13 AT3G12480 118 / 3e-31 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024082 pacid=23141465 polypeptide=Lus10024082 locus=Lus10024082.g ID=Lus10024082.BGIv1.0 annot-version=v1.0 ATGCTTCGAATCTGGCAGGATGAGGAAGAAGCTCGATACCCGCTTCCCGGCTCTAAAGCATTGGAATTGTTTCTGCAAGACCTTTGTGATCGTACATATG AAGTCACCCTTCAAAGAGGAGCAAAGACCATGAGTTCCTTGCACCTGAAGTCGAATATGGATGAAGGCAATGACAGCGATGAAGAACTTAAGAGAAGCAG GACGCATGATCAGAGCCATGCAGGTGGCAGCGGTCGAGGGAGAGGTCGTGGTCGAGGAAGGGGCAGAGGCCGAAGTGCTCGGAACATGGAAAGACAATCT TCTCATCTTGAGGGTGAGTATGAAGCTTGCACAACTCCGCAGGGTACCGGACGCAGCTCATTTGCCAGAGCATCGGTAGAAGAAAGATCAGAATCAAAGG AGATGGTAAAAACGCCTATGACAATTACTGATGGTGTTAATCAAGCTGAAAGGAACTTTGATCTAAACGCTGACGTTAAAGACGGAGAAGATGCAAAAGC TGCAGCCTCAGCAGCAGCTTCCTTAGCATCAGTTCCAGCAGCTGTCCAAAGTTCATCCGCAGTGCCTGCTACCGAGACCACCCACGAAGAATATCCCGGC TGGTCGCTTTCCGAGGTGGCCATTGATCCCCTGCAACTTGCACAGCTCAGCAAAAGAATAGACGAGGACGAAGAAGATTACGATGAAGAAGGATGA
AA sequence Show only first row Show all	>Lus10024082 pacid=23141465 polypeptide=Lus10024082 locus=Lus10024082.g ID=Lus10024082.BGIv1.0 annot-version=v1.0 MLRIWQDEEEARYPLPGSKALELFLQDLCDRTYEVTLQRGAKTMSSLHLKSNMDEGNDSDEELKRSRTHDQSHAGGSGRGRGRGRGRGRGRSARNMERQS SHLEGEYEACTTPQGTGRSSFARASVEERSESKEMVKTPMTITDGVNQAERNFDLNADVKDGEDAKAAASAAASLASVPAAVQSSSAVPATETTHEEYPG WSLSEVAIDPLQLAQLSKRIDEDEEDYDEEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10024082 [exp]	0	1
AT5G11500			unknown protein		Lus10038625 [exp]	4.9	0.8608
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019447 [exp]	7.5	0.8657
AT1G16810			unknown protein		Lus10033383 [exp]	8.8	0.8483
AT5G11500			unknown protein		Lus10037899 [exp]	11.7	0.8768
AT1G55340			Protein of unknown function (D...		Lus10013616 [exp]	13.7	0.8511
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10026287 [exp]	15.5	0.8726
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10017919 [exp]	19.4	0.8321
AT5G47090			unknown protein		Lus10035063 [exp]	19.6	0.8601
AT5G08450			unknown protein		Lus10004299 [exp]	22.9	0.8119
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10036509 [exp]	24.6	0.8703

Compare expression of checked genes

Lus10024082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.