Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37410 50 / 2e-06 CYP81F4 "cytochrome P450, family 81, subfamily F, polypeptide 4", cytochrome P450, family 81, subfamily F, polypeptide 4 (.1) AT1G13710 45 / 7e-05 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041637 [exp] 679 / 0 AT1G34540 64 / 1e-10 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) Lus10004331 [exp] 47 / 3e-05 AT4G12300 449 / 1e-153 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10008423 [exp] 45 / 0.0001 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10036627 [exp] 44 / 0.0003 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G032800 [exp] 331 / 4e-108 AT1G75130 82 / 2e-16 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.003G192300 [exp] 327 / 2e-106 AT4G13310 79 / 2e-15 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) Potri.005G084500 [exp] 52 / 6e-07 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 49 / 6e-06 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G049900 [exp] 43 / 0.0004 AT4G37370 490 / 1e-170 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024083 pacid=23141493 polypeptide=Lus10024083 locus=Lus10024083.g ID=Lus10024083.BGIv1.0 annot-version=v1.0 ATGAGCAGCGCCTCGTGCAAAGATGCTCCAACCAATATCTTCACTCCCAGCCACCACCGCCAGCTCCTCGACAATTGCCTTTCCGGTGGTGGTGGTTCTA GCAGTGACTACGACTACCCGACCAGGGTGTTCAATGTCTTCCTCTGGGTTTCACTCGTCGCAATCACTGCTCTCTTGCTTGAGAAGCTCTTTCTCTTGCT CAGATTCTGGACCAAGTCAACGAATATCCCTGGCCCTCCTTCTCCTTCCTTCTTCCGCCGCTCTCCCCGCTTTGGATCTCGCCAGAGCTTCCTCGACGAT CAGAACCTGGTTAGGGACATTCTTTCAAAGGCTCAGGAGAAATTTCCCTTCACTAGCAAGGCTTTCCGTTTGGCATTTTGTCCATCCAGCCTCTTCTTCT GCCCCTATGAACAACAGAGAAGAGAGGAGTCATTTGCATTGGAATTGAACAAAAAACTAGTAGGGAGAGCACATATGCTATCTATAACTGTTGTAAAGTA TGTGATGGAGAAGGTAGACAAGAGCATGAACTGCACAACATTTTCTCAGCATCTGGCCTTCAGTTATCTGGGCGCTTTGCTCTTTGGAGATGCGTTTCTC ACTTGGTCCGAGGCTTCTTCCTACGAGGATCTTCTAATGGTGATTGCCAAAGATGCTCCTTTCTGCGCTTTGAATGCCATCACCCCATTTTGGAGAAAGG AATTTCGAAGGTTCCGGTCCTCATGTGCTCAGTTCAAAGCACTAACTGAAGATATAGTCGAACAGTATATGACGAACTACCAAACCGACATGGATCAAAA TTTATTGGCTGATCAGTTTGAATTATGCCACCTTAATTCAAGAGAAGTGTTATATGGGAACATTATAGGCATCATGTTTCATGGATGTCTGTCTACAGCT GGTCTAATTAGTGCTGTACTAGAAAGGCTGGCTTCATATCCTAACATACAAGACAAGATATACACGGAAATAACCATGTCACGAAGCGTATCTTCTAAAG AAAGGCATCACGTTGAGGAGATGCTGTTGTTATTAGCTACAATATATGAATCAGCTCGTCTGATGCCATCTGGACTTTTACTGCAGAGGTGTTTGAAAAC TGACTTGCGTCTAAAAAACGGTGTGGATGTACCAGCTGGAGCTGTGCTCATGTCTGTGAAGGCTTCTGATTTGAACAAGGCAACAGCTTGCGCAGAAGAA GTAAATGGAGATGAGGGACCGTTGATTCTGAATGATCCAAATGACAATCCAGCATTCCTTGCCTTTGGTTCTGGTGTGTGTCGGAATTCAGTGATGAGAG TAATCGCCGTTATGTTGACTTCCTTCCTTGAATCCTATGAGCTGACTTGCTCATGTGGTGTACTCACCAAAAATGGCAGGTCAGGATCCATTCAGCGTCA GGGAGTGAACTGA
AA sequence Show only first row Show all	>Lus10024083 pacid=23141493 polypeptide=Lus10024083 locus=Lus10024083.g ID=Lus10024083.BGIv1.0 annot-version=v1.0 MSSASCKDAPTNIFTPSHHRQLLDNCLSGGGGSSSDYDYPTRVFNVFLWVSLVAITALLLEKLFLLLRFWTKSTNIPGPPSPSFFRRSPRFGSRQSFLDD QNLVRDILSKAQEKFPFTSKAFRLAFCPSSLFFCPYEQQRREESFALELNKKLVGRAHMLSITVVKYVMEKVDKSMNCTTFSQHLAFSYLGALLFGDAFL TWSEASSYEDLLMVIAKDAPFCALNAITPFWRKEFRRFRSSCAQFKALTEDIVEQYMTNYQTDMDQNLLADQFELCHLNSREVLYGNIIGIMFHGCLSTA GLISAVLERLASYPNIQDKIYTEITMSRSVSSKERHHVEEMLLLLATIYESARLMPSGLLLQRCLKTDLRLKNGVDVPAGAVLMSVKASDLNKATACAEE VNGDEGPLILNDPNDNPAFLAFGSGVCRNSVMRVIAVMLTSFLESYELTCSCGVLTKNGRSGSIQRQGVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37410		CYP81F4	"cytochrome P450, family 81, s...		Lus10024083 [exp]	0	1
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	2.6	0.9696
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10033085 [exp]	4.2	0.9633
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	4.9	0.9437
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10003269 [exp]	6.5	0.9560
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10039197 [exp]	7.3	0.9337
AT1G34540		CYP94D1	"cytochrome P450, family 94, s...		Lus10041637 [exp]	8.8	0.9494
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	8.8	0.9600
AT4G19420			Pectinacetylesterase family pr...		Lus10035682 [exp]	9.5	0.9455
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	9.6	0.9590
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10015824 [exp]	10.7	0.9562

Compare expression of checked genes

Lus10024083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.