Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041636 [exp] 403 / 1e-144 ND / Lus10005395 [exp] 364 / 3e-129 ND / Lus10005397 [exp] 340 / 9e-120 ND / Lus10005398 [exp] 241 / 4e-81 ND / Lus10024931 [exp] 199 / 2e-63 ND / Lus10022893 [exp] 197 / 3e-63 ND / Lus10022894 [exp] 190 / 3e-60 ND / Lus10024932 [exp] 187 / 2e-59 ND / Lus10008233 [exp] 160 / 8e-47 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10024084 pacid=23141600 polypeptide=Lus10024084 locus=Lus10024084.g ID=Lus10024084.BGIv1.0 annot-version=v1.0 ATGACGTCTACAGTGGCCGGATTACCCAAGTACGTGGTGCTCAAGTCCAAGTCCACCGGGAAGTACCTTCACTACCTATGGAACGACGAGTTCTCCGACT ACTACAAGCACATGGGATCCAAGCGCGACGTCGACCCAGTCAACCCTTTCGTGAAGCTGGAGGTTGTCCCCTCCACAGCCGACCCAACCCTCGTCCACCT CATCTGCTCCTACAACAGCAAGTTCATCCAGCTCGTCAGCAAGGGCGGCGTCTCATGGCTCTCCGCCACCGCCGATTCCCCCGACGAGGACCTTACCAAG GAAACCTCCACCCTCTTCCAGCCCATCTTCCCCGCCGGCGAGCCCAACACCGTCGAATTCCTGCACGTCCAGACGAACCGCAACGTGCGCATCTTCATCA ACAAGGATTACGGCGACAGCATCAACAACGTGGCTTGCGCCTACAGCAAAGACGGAGGGGGCGACATCAACCGCTTCGAGTTCGCAGCGTGGGTTTCGTA CGAGGACGTGATCAAGGCTAAGGACGACGAGATCGAGAAGCTCAAAGCACAGGCAGCTGCTGGGGACGACGATGAGAGTCTGAGTGCTGATGCCATTGTG GAAGAGCTTAGGAAGGACATAAGGGAGCAGAACGAGCAGTTGGAGGCGGCTTATAATGAGATTGATGCTTTAAAAGCTGCCGCAAAAGCCAAGTGA
AA sequence Show only first row Show all	>Lus10024084 pacid=23141600 polypeptide=Lus10024084 locus=Lus10024084.g ID=Lus10024084.BGIv1.0 annot-version=v1.0 MTSTVAGLPKYVVLKSKSTGKYLHYLWNDEFSDYYKHMGSKRDVDPVNPFVKLEVVPSTADPTLVHLICSYNSKFIQLVSKGGVSWLSATADSPDEDLTK ETSTLFQPIFPAGEPNTVEFLHVQTNRNVRIFINKDYGDSINNVACAYSKDGGGDINRFEFAAWVSYEDVIKAKDDEIEKLKAQAAAGDDDESLSADAIV EELRKDIREQNEQLEAAYNEIDALKAAAKAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024084 [exp]	0	1
					Lus10010481 [exp]	2.0	0.9763
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10041966 [exp]	2.4	0.9719
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10016685 [exp]	2.8	0.9646
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10033087 [exp]	3.3	0.9574
					Lus10014719 [exp]	4.2	0.9727
					Lus10008816 [exp]	6.0	0.9718
AT1G15260			unknown protein		Lus10035880 [exp]	7.0	0.9674
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	7.1	0.9701
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	7.7	0.9692
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10041762 [exp]	8.0	0.9274

Compare expression of checked genes

Lus10024084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.