Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28590 305 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G31550 301 / 8e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28600 301 / 1e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28580 298 / 1e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28610 291 / 6e-96 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28570 290 / 2e-95 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G28640 290 / 2e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G27360 286 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28670 281 / 7e-92 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28650 281 / 9e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010208 [exp] 435 / 2e-152 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10013938 [exp] 380 / 1e-130 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000523 [exp] 369 / 3e-126 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015476 [exp] 243 / 2e-75 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10019947 [exp] 207 / 6e-64 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10020657 [exp] 209 / 2e-60 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015477 [exp] 194 / 3e-57 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10034763 [exp] 168 / 3e-48 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012644 [exp] 163 / 2e-46 AT4G01130 494 / 1e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054300 [exp] 307 / 2e-102 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054400 [exp] 248 / 4e-79 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024966 [exp] 213 / 1e-65 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 213 / 1e-65 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 213 / 2e-65 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024300 [exp] 211 / 4e-65 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 209 / 6e-64 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G064100 [exp] 176 / 1e-53 AT1G28580 221 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G015200 [exp] 168 / 3e-48 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G463900 [exp] 165 / 3e-47 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10024085 pacid=23141594 polypeptide=Lus10024085 locus=Lus10024085.g ID=Lus10024085.BGIv1.0 annot-version=v1.0 ATGGCTACTCCTCCACTTGTCCCGCGTCTTGTACAACATACACTACTCCCCTTTCTTCTCTTCATCCAGTTCACTCGAGGAATAACTATCGAATCTCCTG TTAAATCATACGCTTCCCTGTTCAGCTTCGGAGATTCTGCCACCGCAGCCGGAGTCCAAACCAAGGACCTTGCTCCGGGAACAGCTGCTCCCCACTGCGC ATTCCCTCCCTACGGAGAAACCTACTTCCACACACCCACCGGCCGTTGCAGCGACGGCAGAATCATCGTCGACTTCCTCGCTCAGCAATTACAACTCCCT TTACTCCCGCCGTACATGGGAGAAGAACCAATCACCAACTCCACGGCTTTCGCTCGAGGAGCCAATTTTGCGGTGGTTTCCGCCACCGCACTCGGTCCGG ATTTCCTCGAGGCCAGAGGAATACCCGGGTCATGCCTGAATTGTTCCCTCAGCGTTCAGCTCCGCAGGTTCAGAACCGTCCTGAACTCACTCTGTTCATC TCCGACGGAATGCAAGGACTACCTGAGCAAATCCCTAATTCTCCTCGGAGAGATCGGAGGAGTCGATTACCAACGCGCTTCGTATCAGGATTTACCCTCC GATAAGGTCGAGGAGCTGATTCCTCTTGTCGTGAAACGGATCGGGTCGGCTATGGAGGAACTAATCGGACTCGGGGCGGTTAATTTCATAGTTCCAGGCG ATTTCCCTAAAGGATGCTTCCCTGCTTATCTGACGAGGTTTATGAGCTCCGACCCTAGCGATTACGATCCTGTCACCGGCTGTCTCGTCTACCACAACTG GTTCTCCGATTACCATAATAGAATGCTCCAGCAGGAGATTACGAGGGTGCAGGGGCTCCACCCGAGTGTGGAAATTCAGTACGGAGACTATTACGGGTCG GCTATTAGGATGCATATAAACCCGGAAAAGTACGGTTTGAAGAGAGTGGCAGTGAATAAAGCGTGCTGTGGGGCCGGAGGGCCGTACAACTATGACCCCA CGGCGGTCTGCGGTAGGCCAGGCGCGGTTGCTTGTGATAGTCCTAGTACGTATGTGAAGTGGGACGATCATCACTACACCGAAGCGGCTAATCGAATTAT TGCCGGAGATGTCTTCCGACGTCGAGGAAAGCAACAAAGCTTGTCGTCGGCGTAA
AA sequence Show only first row Show all	>Lus10024085 pacid=23141594 polypeptide=Lus10024085 locus=Lus10024085.g ID=Lus10024085.BGIv1.0 annot-version=v1.0 MATPPLVPRLVQHTLLPFLLFIQFTRGITIESPVKSYASLFSFGDSATAAGVQTKDLAPGTAAPHCAFPPYGETYFHTPTGRCSDGRIIVDFLAQQLQLP LLPPYMGEEPITNSTAFARGANFAVVSATALGPDFLEARGIPGSCLNCSLSVQLRRFRTVLNSLCSSPTECKDYLSKSLILLGEIGGVDYQRASYQDLPS DKVEELIPLVVKRIGSAMEELIGLGAVNFIVPGDFPKGCFPAYLTRFMSSDPSDYDPVTGCLVYHNWFSDYHNRMLQQEITRVQGLHPSVEIQYGDYYGS AIRMHINPEKYGLKRVAVNKACCGAGGPYNYDPTAVCGRPGAVACDSPSTYVKWDDHHYTEAANRIIAGDVFRRRGKQQSLSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	0	1
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	2.0	0.9052
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	2.2	0.9116
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Lus10030978 [exp]	2.6	0.8900
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	3.5	0.9044
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	5.9	0.8930
AT3G48660			Protein of unknown function (D...		Lus10015769 [exp]	6.1	0.8409
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10030068 [exp]	6.5	0.8357
AT2G44260			Plant protein of unknown funct...		Lus10033542 [exp]	6.9	0.8914
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10024401 [exp]	7.3	0.8606
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	8.7	0.8679

Compare expression of checked genes

Lus10024085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.