Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16080 187 / 1e-56 ATCXE17 carboxyesterase 17 (.1) AT1G68620 176 / 4e-52 alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 169 / 1e-49 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G27320 167 / 1e-48 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 163 / 3e-47 ATCXE18 carboxyesterase 18 (.1) AT3G05120 157 / 6e-45 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 153 / 6e-44 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 145 / 8e-41 ATCXE20 carboxyesterase 20 (.1) AT3G48690 144 / 2e-40 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 144 / 6e-40 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041632 [exp] 604 / 0 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Lus10036168 [exp] 205 / 2e-63 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 203 / 6e-63 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 196 / 3e-60 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 187 / 9e-57 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 195 / 2e-55 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017587 [exp] 179 / 2e-53 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10033548 [exp] 176 / 3e-52 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10021743 [exp] 168 / 2e-49 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192650 [exp] 469 / 3e-167 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.001G032400 [exp] 468 / 6e-167 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192600 [exp] 449 / 3e-159 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G031500 [exp] 393 / 3e-137 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 215 / 2e-67 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G127600 [exp] 205 / 2e-63 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.017G113700 [exp] 201 / 5e-62 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.016G065000 [exp] 201 / 5e-62 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G101400 [exp] 195 / 1e-59 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.006G198800 [exp] 194 / 2e-59 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10024087 pacid=23141576 polypeptide=Lus10024087 locus=Lus10024087.g ID=Lus10024087.BGIv1.0 annot-version=v1.0 ATGGTTGCCCAGGAGAAGACGCTCGTCGATGAGGTCTCAGGCTGGCTGCGGCTTTACAGCGACGGCTCCGTCGACCGGACATGGACAGGGCCTCCGGAGG CCAAGTTCATGTCCGAACCCGTCCCACCCCACGACCACTTCGTCCACGGTGTCTCCACCCGTGACGTCACCATCGACCCGAACTCCGGACTCAAGGTCCG CGTCTACCTCCCGGAGCCCCAACCCGATGCCCAATTAAAACAGAAGCTACCGGTCTTCCTCCACCTCCACGGCGGCGGATTCTGCATCAGCCAACCGGAC TGGTTCATGTACTACAACACCTACACAACCCTCGCCCGATCCGCTAACGCCGTCGTCGTCTCCGTCTACCTCCGCCTCGCCCCTGAGCACCCCCTTCCCG CCGCCTGCGACGACGGATTCTCCGCCCTCCGCTGGCTAGCTTCCTTGTCGGCGGACCAAAACGACGAGTCATGGCTGAGTTCCGTTGCCGATTTCCAGCG AGTTTTCCTGATCGGGGACAGCTCCGGCGGGAACTTAGTTCACCAAGTTGCGGTCAGAGCCGGATCGGCAACGGCGGCGTCAGAACTCAGTCCGTTGAAG TTGGCCGGAGCAATTCCGATCCAACCGGGGTTTGTGCGGTCGACGAGGAGCAGATCTGAGATGGAGCAGCCGGAATCGCCGATGCTAACGCTGGATATGG TGGACAAGTTCTTGGGACTGGCGCTACCGGTGGGGTCCACAAAGGACCATCCAATAACGTGTCCGATGGGGCCCGATGCCCCGGCGTTGAAAGGGATGAA GCTGCCGCCATATCTGATGGTGGTGGCGGAGAAGGATCTGGTGAAGGACACGGAGATGGAGTTCTATGAGGCGATGAAGGAAGCCGGGCAAGAAGTGGAG CTGTTGATTAACGCCGGGATGGGACACAGCTTTTACCTGAACAAGATTGCGTTGGACTTTGACCCGTTGACTGCTGAGGAATTCGGGAGGATGATTGACG GGATTGTTCAGTTCGTCAACCGCCGCCGCTAA
AA sequence Show only first row Show all	>Lus10024087 pacid=23141576 polypeptide=Lus10024087 locus=Lus10024087.g ID=Lus10024087.BGIv1.0 annot-version=v1.0 MVAQEKTLVDEVSGWLRLYSDGSVDRTWTGPPEAKFMSEPVPPHDHFVHGVSTRDVTIDPNSGLKVRVYLPEPQPDAQLKQKLPVFLHLHGGGFCISQPD WFMYYNTYTTLARSANAVVVSVYLRLAPEHPLPAACDDGFSALRWLASLSADQNDESWLSSVADFQRVFLIGDSSGGNLVHQVAVRAGSATAASELSPLK LAGAIPIQPGFVRSTRSRSEMEQPESPMLTLDMVDKFLGLALPVGSTKDHPITCPMGPDAPALKGMKLPPYLMVVAEKDLVKDTEMEFYEAMKEAGQEVE LLINAGMGHSFYLNKIALDFDPLTAEEFGRMIDGIVQFVNRRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10024087 [exp]	0	1
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10041632 [exp]	2.0	0.8756
AT2G33580			Protein kinase superfamily pro...		Lus10008586 [exp]	4.5	0.8765
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10041460 [exp]	7.3	0.8146
AT5G17350			unknown protein		Lus10034636 [exp]	9.7	0.8616
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10029260 [exp]	9.8	0.8685
AT4G00300			fringe-related protein (.1.2)		Lus10005120 [exp]	13.6	0.8730
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10033798 [exp]	14.8	0.8337
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10018405 [exp]	16.1	0.8224
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	17.9	0.8537
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10025891 [exp]	23.9	0.8283

Compare expression of checked genes

Lus10024087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.