Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12660 80 / 1e-16 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT4G12730 76 / 1e-14 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT2G24450 73 / 4e-14 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT5G55730 66 / 2e-11 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT4G31370 59 / 1e-09 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT3G60900 55 / 6e-08 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G46550 49 / 4e-06 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041630 [exp] 358 / 2e-120 AT3G12660 86 / 8e-19 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Lus10026107 [exp] 177 / 2e-50 AT3G12660 91 / 1e-20 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Lus10000415 [exp] 162 / 1e-47 AT3G12660 91 / 4e-22 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Lus10001178 [exp] 67 / 1e-11 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10016617 [exp] 66 / 2e-11 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10006391 [exp] 66 / 2e-11 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10012344 [exp] 66 / 2e-11 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10038004 [exp] 64 / 2e-11 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10022517 [exp] 66 / 3e-11 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037800 [exp] 99 / 1e-22 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G005100 [exp] 83 / 1e-17 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 75 / 9e-15 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.001G367900 [exp] 69 / 3e-12 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G168100 [exp] 67 / 1e-11 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.011G093500 [exp] 65 / 3e-11 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G071700 [exp] 61 / 8e-10 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.014G162900 [exp] 42 / 0.0005 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10024089 pacid=23141536 polypeptide=Lus10024089 locus=Lus10024089.g ID=Lus10024089.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCCTCCATCCACCTGATCCTCCTCTGTCTCCTCGCCTTCACCTCTTCCTCTTCAGCCTTCAACGTAACTTCCCTCTTGGGCCCACTCC CCCAATTCAGCACCTTCTCCAACTACCTCACCCAGGTCGGCCTCGTCTCCATCATCGCCGACCTCAAAAATGTCACCATCCTCGCCGTCCCTAACTCCAA GATGGCTTCCATCTCCGGTAAGTCACGTGACCAAATCAGGCGTATCATGGCCATGCACATCATCCCCGAGTACTACGACCTCGAAACCCTCATCAAGAAA ACCCTCCCAAACGGCACCGCATCACTCCGCACTGTTTACGTCCTCACCGGTTTGGCTAGGGGCAATGACGGAATTTTACGCGTTACTCAGAGGGAGAGAT CTAATTCCCACCGCTTCACTTTCTCCAGCGCAGTTGACCTCCCACGCGCCAACCGGAATAATATTAATCTCATCCAATCCGTCACCGTTCCGTCTCACAA CATCTCCGTTTTCCTCGTCAGCGACTTGATCACCGCCTCTCCTCCTCCTCCATCAGACGCCGCCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNGCACCGTGCTCTCACTCACCGTCGCCGCCCCCACCGCCTCCCCTCCCCCTCCATCAGGCGTCGCCGCCGGCGACCGGTTAGGTGGCG CCCGGATTTCAATGTCGAGCAAAGTAGTGGTGAAAAGGGATCAAGAGAAGCAGACGACGGAGGAGGGAATCTTACCCAAGACGTCGTTGGATGTCTTACT GGTACCTACTGAGGATGCTTCTCCGGCCAAAGCGCCTGCAAAAGGCGGTTCCTCCTCCTCCTCCTCCTCCCCCAAGAAATCCCCTTCCAAGGCTCCGTCG TCCCCTTCGTCCAATTCCACCTCTAAGGGGAAATCACCTTCCTCCGCGCCCTCGTCGGACTCTTCAGCTCCGGCCCCAACCAAGAAGAAGAGCGACAGTC CATTACCGGCACCGACAAAGCCTTCCCCTGCTTCCAATCCGCCCAATGAACCCAAGGCGAAAGCCTCAGAACCGTCTCCGTCCGAATCATCAGAAAATGC CCCGCCGCCGTCCAAGTCCGGGAACACCTCATCACCGCCACCTTCCGAATCTCCGGCAAGTACTGGAACTTCAACTTCTGCGCCACCTTCCGGAAACTCT CCAACGAAATCATCTCCTCCGGCACCGGCTTCGGAATCTACGAGTGCGGAGAGTCCATCCGGAGAAGCTCCATCGGCGGAAGCTCCGAAGAGTGGGGCCG ATCCAATGATGGGCAACAAAGTTTGGGTCATGGTTACGGCTATGGCCTTGTGGGCCCTGGCCGCATAG
AA sequence Show only first row Show all	>Lus10024089 pacid=23141536 polypeptide=Lus10024089 locus=Lus10024089.g ID=Lus10024089.BGIv1.0 annot-version=v1.0 MASSSSIHLILLCLLAFTSSSSAFNVTSLLGPLPQFSTFSNYLTQVGLVSIIADLKNVTILAVPNSKMASISGKSRDQIRRIMAMHIIPEYYDLETLIKK TLPNGTASLRTVYVLTGLARGNDGILRVTQRERSNSHRFTFSSAVDLPRANRNNINLIQSVTVPSHNISVFLVSDLITASPPPPSDAAAXXXXXXXXXXX XXXXXTVLSLTVAAPTASPPPPSGVAAGDRLGGARISMSSKVVVKRDQEKQTTEEGILPKTSLDVLLVPTEDASPAKAPAKGGSSSSSSSPKKSPSKAPS SPSSNSTSKGKSPSSAPSSDSSAPAPTKKKSDSPLPAPTKPSPASNPPNEPKAKASEPSPSESSENAPPPSKSGNTSSPPPSESPASTGTSTSAPPSGNS PTKSSPPAPASESTSAESPSGEAPSAEAPKSGADPMMGNKVWVMVTAMALWALAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10024089 [exp]	0	1
AT2G41480			Peroxidase superfamily protein...		Lus10015555 [exp]	5.7	0.7925
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10039402 [exp]	7.7	0.7861
AT3G57120			Protein kinase superfamily pro...		Lus10029720 [exp]	8.2	0.8159
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10033798 [exp]	8.8	0.8126
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10003336 [exp]	10.1	0.7724
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10013675 [exp]	13.7	0.7652
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10012978 [exp]	19.5	0.7737
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	19.9	0.7508
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021540 [exp]	27.6	0.7565
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	27.9	0.7689

Compare expression of checked genes

Lus10024089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.