Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79690 874 / 0 ATNUDT3 nudix hydrolase homolog 3 (.1) AT3G61610 146 / 1e-38 Galactose mutarotase-like superfamily protein (.1) AT5G57330 141 / 9e-37 Galactose mutarotase-like superfamily protein (.1) AT3G01590 129 / 1e-32 Galactose mutarotase-like superfamily protein (.1.2) AT5G14500 128 / 2e-32 aldose 1-epimerase family protein (.1) AT4G23730 120 / 8e-30 Galactose mutarotase-like superfamily protein (.1) AT4G25900 120 / 1e-29 Galactose mutarotase-like superfamily protein (.1) AT5G66530 66 / 2e-11 Galactose mutarotase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026103 [exp] 879 / 0 AT1G79690 1136 / 0.0 nudix hydrolase homolog 3 (.1) Lus10002329 [exp] 751 / 0 AT1G79690 800 / 0.0 nudix hydrolase homolog 3 (.1) Lus10041626 [exp] 566 / 0 AT1G79690 490 / 4e-166 nudix hydrolase homolog 3 (.1) Lus10041629 [exp] 209 / 1e-60 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 189 / 5e-53 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 188 / 5e-53 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10020015 [exp] 157 / 4e-42 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 144 / 5e-38 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 144 / 1e-37 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185600 [exp] 922 / 0 AT1G79690 1216 / 0.0 nudix hydrolase homolog 3 (.1) Potri.003G185951 [exp] 920 / 0 AT1G79690 1218 / 0.0 nudix hydrolase homolog 3 (.1) Potri.003G185776 [exp] 920 / 0 AT1G79690 1214 / 0.0 nudix hydrolase homolog 3 (.1) Potri.018G089800 [exp] 154 / 3e-41 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 154 / 4e-41 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 152 / 2e-40 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 149 / 1e-39 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G095300 [exp] 138 / 6e-36 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 135 / 6e-35 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 120 / 9e-30 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF03571 [flax] [poplar] Peptidase_M49 Peptidase family M49 CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10024090 pacid=23141480 polypeptide=Lus10024090 locus=Lus10024090.g ID=Lus10024090.BGIv1.0 annot-version=v1.0 ATGCAATTGACAGAAGAAATTACAGACTCTTGCTGGTACAAATGTGGACAGGTTTATCTGAATGGAGGTCAGGCCATATCTTGGAAGAATGAATTTGGAG AAGAGTTGTTATTTCTTAGTAGCAAGGCTGTTTTCAAGCCCCCTACGGCAATGAGAGGAGGTATCCCAATTAGCTTTCCTCAATTTGGAACGCATGGATC CCTTGAACAACATGGATTTGCAAGAAACACAGTTTGGACCATCGATAAAGATCCTCCTCCTTTTGCAACAGTTACTTGCAATAAAGCATTCGTTGATTTA ATACTTAAACCATCTGAAGATGATCCAAAGGGCTGGCCTCACAGGCGTATCGGCAGTCAGAATGATCATTATCACGACAAGGAAGGAGGGGAGGTCAGAG AGGTTCGAGTGTGGATTTTTGCAGAGAAAAGCCAAGAGCTCCTTCTCCGAAAGAATGGCTGTCGAGAAGGACTTTGGGATTCGTCCGCCACCGCCACCAT CTCAACTACTCATTCCTCTCTTCAATCAGCTAGCTGGGTGGTGAACGAGCAACTTGAGATCAGCCTTCCAACTGATGCATTTGAGTTGGTGTCCAATGAT GTTTATCTGGTAACAATCTTGGAGCCAATCCCATTGCAGGCATTTCCTCTTCAGGAGGAGCAAAAAGGGTCGATTGTGAAATACATTTCATACAAGGAAT ACGAAAGCTTACTCGCAGAACACGATCCTGGTTATGCCCATGTCAGCAGTGAAGAATATGCTCAACTCTTTGCCACTATCACCAAAAGGTACCAAGAGGA TGATCCTGGCGCTCGCTCCACGACCTTACAACTCCAACTCCAACGCTACGCTCCTGTCTCCCTCACTGCTGAGTTGTCAGGACTATCAGATGGAGACAAA GAGGCCTTGGGTTTCATAATCAAGGCTGCAAAATGTATTGATGAGATATTCTACCCTCAGGTATTGGAGATCAATCCGGTTCTTAGAGATTGGCTTCAGA AGCAAGCAGAGGGAGCCAATGCATCTGAACTCGATAAGCTCAAATGGTCTTACTATAAAATTAACAAGAGCCCTTGGTCCAGTCTCGATGAGAATGAGCC ATTCCTGACAACCAAAGACTCGGCCATAAGGTTGATTCCTGAAGCCACAAAGGCAGTCAGGGGATGGAAGGGTCTGGAGTACAAAGTTGCATTCCCTAAC AAGAAACCTCCTGGTGCCAATTTCTACCCTTCAGACATGGACAAGCAGGAGTTCGAGTCATGGAAAAGCATCCTCTCGGAATCACAGCAGAAAGAGGCCA CAGGTTTCTTCACAGTTATCAGGAGGGAGAGTGAAAGTGGTCAACTTTATATTGTTCCTTACTCGAAAGAGTATGCCTCTTCCCTCACAAAGGCTGCTGG CCATCTCCAAAAAGCTGCAGACTTGGCTACTACTCCAAGGCATAAACAAATTCCGACAACTATGCTAATCATATCTTGGCACTTGCATTTCCTTCTTACT GAAAAAAGCCTAATGGTTTATGTTCTGTTTCTTTGTAGTTTGAAGAAGTTGCTGCATGCCAAGGCTGACGCATTCCTCTCAAATGACTATTATGAATCAG ACATTGCCTGGATGGATTTGGATTCCAAGCTTGATATCACTATTGGTCCTTATGAGACATATGAAGATTCACTCTTTGGATTCAAGGCTACGTTTGAATC TTTCATCGGGATTCGAGATGATAAGGGATCTGCTCGTATCAAAATGTTCGGTGAAAATATGATGAGGTTGGAGCAAAATCTTCCAATGGATGATCAGTAC AAATCAACTGAAGTCAATGTATCACCAATTCGTGTCGTTCAACTCATTTACAATTCTGGGGATGTTGATGGCCCTCAGATTAATGCTTTCAATCTACCAA ATGACGAGCGTATAGTCAAAGATCGAGGCACTTCGATGGTGATCATCAAGAATATTCAAGAAGCAAAGTTTGAGAAAATCCTGAAGCCTATAGCTGATGT CTGCATCAGCAACGACCAAAAGAACCTCATAGATTTTGATTCCTTCTTTACACACATCACCTGCCATGAGTGCATCCATGGCATTGGTCCCCACACCATT ACACTTCCAGATGGTTCAACCTCCACTGTCAGACAGGAGCTGCAAGAACTCCACACAGTTCTGGAAGAAGCGAAAGCTGATATAGTTGGCCTTTGGGCAT TGAGGTTTTTCGTCTCTCAGGGTTTGCTTCCAAAGAGCATGTTGGAGTCCATGTATGTTTCATTCTTAGCAACATGCTTCCGAGCAGTTCGGTTCGGGTT GCAGGAGGCTCATGGGCGAGGTCAAGCTCTGCAGTTCAACTGGCTATTTGGGAAGGAGGCCATTGTTCTAAATCATGATGATGACACTTTTTCTGTTGAT TTCACAAAGGTTGAAGAGGCGGTTGAGAGCCTGAGCAGGGAGATTCTCACGATCCAAGCAAAAGGAGATAAACAGGCTGCAACTGCCCTCCTTCAGAAAT ATGGCCAGATGACTCAACCTTTGCAGCTTGCGTTGGCCAAATTAGAGAAAATTCAGGTGTCTGTGGACATAGCTCCATCATTTCCCATGGCAGATGAGAT CCTCATGCAGAGTGATGCTTGA
AA sequence Show only first row Show all	>Lus10024090 pacid=23141480 polypeptide=Lus10024090 locus=Lus10024090.g ID=Lus10024090.BGIv1.0 annot-version=v1.0 MQLTEEITDSCWYKCGQVYLNGGQAISWKNEFGEELLFLSSKAVFKPPTAMRGGIPISFPQFGTHGSLEQHGFARNTVWTIDKDPPPFATVTCNKAFVDL ILKPSEDDPKGWPHRRIGSQNDHYHDKEGGEVREVRVWIFAEKSQELLLRKNGCREGLWDSSATATISTTHSSLQSASWVVNEQLEISLPTDAFELVSND VYLVTILEPIPLQAFPLQEEQKGSIVKYISYKEYESLLAEHDPGYAHVSSEEYAQLFATITKRYQEDDPGARSTTLQLQLQRYAPVSLTAELSGLSDGDK EALGFIIKAAKCIDEIFYPQVLEINPVLRDWLQKQAEGANASELDKLKWSYYKINKSPWSSLDENEPFLTTKDSAIRLIPEATKAVRGWKGLEYKVAFPN KKPPGANFYPSDMDKQEFESWKSILSESQQKEATGFFTVIRRESESGQLYIVPYSKEYASSLTKAAGHLQKAADLATTPRHKQIPTTMLIISWHLHFLLT EKSLMVYVLFLCSLKKLLHAKADAFLSNDYYESDIAWMDLDSKLDITIGPYETYEDSLFGFKATFESFIGIRDDKGSARIKMFGENMMRLEQNLPMDDQY KSTEVNVSPIRVVQLIYNSGDVDGPQINAFNLPNDERIVKDRGTSMVIIKNIQEAKFEKILKPIADVCISNDQKNLIDFDSFFTHITCHECIHGIGPHTI TLPDGSTSTVRQELQELHTVLEEAKADIVGLWALRFFVSQGLLPKSMLESMYVSFLATCFRAVRFGLQEAHGRGQALQFNWLFGKEAIVLNHDDDTFSVD FTKVEEAVESLSREILTIQAKGDKQAATALLQKYGQMTQPLQLALAKLEKIQVSVDIAPSFPMADEILMQSDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	0	1
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	1.0	0.9937
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	2.0	0.9673
AT1G15260			unknown protein		Lus10037547 [exp]	2.4	0.9685
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	3.5	0.9736
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10010758 [exp]	3.7	0.9479
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Lus10039719 [exp]	3.7	0.9347
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10028332 [exp]	4.9	0.9478
AT1G23070			Protein of unknown function (D...		Lus10036614 [exp]	6.5	0.9481
					Lus10010481 [exp]	7.4	0.9663
AT5G60680			Protein of unknown function, D...		Lus10041309 [exp]	8.7	0.8837

Compare expression of checked genes

Lus10024090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.