Plant FIBer expression Database

Lus10024091 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041628
[exp]
147 / 1e-45 AT5G43150 52 / 3e-10 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G037400
[exp]
89 / 4e-23 AT5G43150 56 / 1e-11 unknown protein
Potri.003G187500
[exp]
86 / 7e-22 AT5G43150 51 / 8e-10 unknown protein
Potri.018G131900
[exp]
40 / 0.0002 ND /
PFAM info
Representative CDS sequence
>Lus10024091 pacid=23141575 polypeptide=Lus10024091 locus=Lus10024091.g ID=Lus10024091.BGIv1.0 annot-version=v1.0
ATGAGAGGGAGGGGTGGACTTGTAGCCGTCTGGCCGGAGAAATATGATGATGCGGGAACGAAGCTTTCAATCCAAAAACAAGCAAGGAAATTAAACGACA
CAATTCCTTTGGGGCAGAAACCAGAGCAGAGCAGAGAAGAGAAGAGGCCGGCGGTTTCAGTCTGGCCGGGGAAACGAATCACCTCCCTCAGAGCTCTCGC
TCGCAGTAGCCAGGACGCCGGCGGTTTGTTGAGGAGATCTCGGGTGAGAAAGTGGAAGGGATCCCGACTGAACAACAACAAGGATAGATTGATGGAGTTC
TGGGATAAGGTTATCTTTCCCGTCCGCCGCGCTTGGACCGCCGTTTCTGCTCGCGTCAAGTCCCGCAAACACGGTAGTGGCAGCATTCTTATTCTTTACA
ACGACGGTCAAAATTGCGGGTACAAGGGACTCCCAAGCACATGGGAAAAGCAGCGCAGGGAAATGCTGCGCAGGTCTGAAACGGAGATGATCGGCGGCGG
CAATCTTCAGAAGCGTAATCGCCGGTCGTTCTGGAGGGTCTTCGTCTGGTCTAGTCACAGGAGTAGCGCATCATCTGCAGCTTCACCTCTTTCTGCAGAT
ATGATTTGA
AA sequence
>Lus10024091 pacid=23141575 polypeptide=Lus10024091 locus=Lus10024091.g ID=Lus10024091.BGIv1.0 annot-version=v1.0
MRGRGGLVAVWPEKYDDAGTKLSIQKQARKLNDTIPLGQKPEQSREEKRPAVSVWPGKRITSLRALARSSQDAGGLLRRSRVRKWKGSRLNNNKDRLMEF
WDKVIFPVRRAWTAVSARVKSRKHGSGSILILYNDGQNCGYKGLPSTWEKQRREMLRRSETEMIGGGNLQKRNRRSFWRVFVWSSHRSSASSAASPLSAD
MI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10024091
[exp]
0 1
AT5G04530 KCS19 3-ketoacyl-CoA synthase 19 (.1... Lus10033625
[exp]
1.7 0.8486
AT5G43150 unknown protein Lus10041628
[exp]
2.8 0.8387
AT5G49610 F-box family protein (.1) Lus10017086
[exp]
6.0 0.8326
AT3G19553 Amino acid permease family pro... Lus10040966
[exp]
14.1 0.8011
AT3G23110 EMB2800, AtRLP3... EMBRYO DEFECTIVE 2800, recepto... Lus10024721
[exp]
15.0 0.8288
AT3G63220 Galactose oxidase/kelch repeat... Lus10042607
[exp]
16.7 0.8050
AT2G31820 Ankyrin repeat family protein ... Lus10027074
[exp]
20.8 0.7914
AT2G17840 ERD7 EARLY-RESPONSIVE TO DEHYDRATIO... Lus10034499
[exp]
21.4 0.8080
AT1G80400 RING/U-box superfamily protein... Lus10011475
[exp]
22.6 0.7870
AT4G12300 CYP706A4 "cytochrome P450, family 706, ... Lus10024585
[exp]
23.5 0.8219

Lus10024091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.