Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14250 205 / 5e-65 RING/U-box superfamily protein (.1) AT3G53690 193 / 3e-60 RING/U-box superfamily protein (.1) AT5G37560 147 / 4e-41 RING/U-box superfamily protein (.1) AT3G45470 126 / 2e-35 IBR domain containing protein (.1) AT2G26135 124 / 7e-33 RING/U-box protein with C6HC-type zinc finger (.1) AT5G60250 125 / 1e-32 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G21420 124 / 1e-32 IBR domain containing protein (.1) AT3G45540 115 / 4e-30 RING/U-box protein with C6HC-type zinc finger (.1) AT2G25360 115 / 1e-29 RING/U-box superfamily protein (.1) AT4G19670 112 / 4e-28 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000412 [exp] 314 / 6e-107 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10026104 [exp] 305 / 1e-103 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10036128 [exp] 139 / 2e-37 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036127 [exp] 124 / 4e-32 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10038341 [exp] 120 / 1e-30 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 113 / 3e-28 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10022063 [exp] 107 / 1e-27 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1) Lus10042610 [exp] 89 / 3e-20 AT3G53690 113 / 9e-17 RING/U-box superfamily protein (.1) Lus10013371 [exp] 75 / 4e-15 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037200 [exp] 280 / 4e-94 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 260 / 2e-86 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 186 / 2e-56 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 138 / 9e-40 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 134 / 4e-38 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.006G123500 [exp] 133 / 2e-37 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.006G104700 [exp] 138 / 3e-37 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G150100 [exp] 130 / 3e-34 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.015G117600 [exp] 112 / 3e-28 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.012G119000 [exp] 112 / 3e-28 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10024093 pacid=23141499 polypeptide=Lus10024093 locus=Lus10024093.g ID=Lus10024093.BGIv1.0 annot-version=v1.0 ATGTCACAATTAACACAACCACCGATACCGCTGTCAGGGCGGGAGCGACATCACCTCTCCGGTATCATCAATTTGGTCGACAATGACGTCGAATATGCGG CGGAGCAGGAGAGGCCGCTGAAGCGTACCAAGGTCGAAGAAGAAGAAGAAGAAGAAGAAGCAGGGGAATCCTGGAAGAGGTTCTGCGAGATATGTGCGGA GAGGAAAGAGCAGGACCAGATGCTGAGAATGGAGTCCTGCAGCAACAGCCACGCTCCCTACTGCTCCGACTGCATATCCCGACACGTGGCGACCAAGCTC CAGGGCGGAATTGTAACCGTCGCATGCCCCGGGGTGGGATGCGGTACGTTGATTGAGTTGGAATCCTGCAGGGCCGTTCTGTCCAAGGGAGTAATCGAGC AGTGGGAGGAGCTGCTCTGCCGCGAACTAATTTGGAAATCGGAGGTTTATTATTGTCCGTTCAAGGACTGTTCGGCGGTTCTCGTGGTTGAAGGGGAAGT AATGTTGTCGATGAGGGAATCGGAGTGTCCGCACTGCCACAGGCTGTTCTGCGCGCAGTGCCGGGTGGCGTGGCACTCCGGGTTTGACTGCCAAGGGTTC AAGCGGCTGAGTCAGGCGGAGGGGAGAGGGAAGGAAGACATTGTGGTAATTGAGATGGCGAAGAGTAATAAGTGGGGGCGATGCCCTCGCTGCAAATTCT ACGTTGAGAGAATCGAAGGTTGCCCTCACATCACTTGCAGGTGTAAGTATGAGTTCTGTTATGGGTGTGGCGCGGACTGGAGCCGCTATCACGGTGGATG TAGCAGAGACTGA
AA sequence Show only first row Show all	>Lus10024093 pacid=23141499 polypeptide=Lus10024093 locus=Lus10024093.g ID=Lus10024093.BGIv1.0 annot-version=v1.0 MSQLTQPPIPLSGRERHHLSGIINLVDNDVEYAAEQERPLKRTKVEEEEEEEEAGESWKRFCEICAERKEQDQMLRMESCSNSHAPYCSDCISRHVATKL QGGIVTVACPGVGCGTLIELESCRAVLSKGVIEQWEELLCRELIWKSEVYYCPFKDCSAVLVVEGEVMLSMRESECPHCHRLFCAQCRVAWHSGFDCQGF KRLSQAEGRGKEDIVVIEMAKSNKWGRCPRCKFYVERIEGCPHITCRCKYEFCYGCGADWSRYHGGCSRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	0	1
AT5G18980			ARM repeat superfamily protein...		Lus10034018 [exp]	1.0	0.9687
AT2G01300			unknown protein		Lus10004062 [exp]	1.7	0.9551
AT2G14095			unknown protein		Lus10035649 [exp]	2.0	0.9628
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10028797 [exp]	2.2	0.9466
AT1G53210			sodium/calcium exchanger famil...		Lus10033629 [exp]	2.8	0.9486
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037988 [exp]	3.5	0.9466
AT2G46550			unknown protein		Lus10012748 [exp]	4.0	0.9324
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	6.0	0.9142
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10009086 [exp]	6.6	0.8799
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10011232 [exp]	6.7	0.8897

Compare expression of checked genes

Lus10024093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.