Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16080 314 / 6e-107 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041625 [exp] 386 / 2e-135 AT1G16080 452 / 2e-161 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G040100 [exp] 338 / 2e-116 AT1G16080 466 / 2e-166 unknown protein Potri.003G185754 [exp] 325 / 1e-111 AT1G16080 423 / 5e-150 unknown protein Potri.003G185501 [exp] 323 / 8e-111 AT1G16080 422 / 2e-149 unknown protein Potri.003G185901 [exp] 318 / 3e-109 AT1G16080 417 / 4e-148 unknown protein Potri.001G041140 [exp] 319 / 5e-109 AT1G16080 427 / 2e-151 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024094 pacid=23141569 polypeptide=Lus10024094 locus=Lus10024094.g ID=Lus10024094.BGIv1.0 annot-version=v1.0 ATGGCAGCACAAACCCTTGCTTCTTCTCTTACTAATTCCTCTCTTTTGCAACCCTCTTCTAACTTACCCCGCTTTGCCTCTCGTCCAACCTTTTCCAAAG CGCGTTGCACAATTTCCGCTATGGCCGCAGCGCCATCCACCATTGCTTCTGCTACCAAGGTGGTACCGGCGGTGATTGTCGGCGGGGGACGGGTCGGGAG AGCCTTACAAGACATGGGTACGGGGCAGGATTACATGGTCAAGAGAGGGGATCCAGTTCCTGCTGATTTCCAAGGCCCCATTTTGGTCTGCACCAGGAAC GATGATCTGGACGCTGTTCTCCAAGCTACCCCTAAATCGAGATGGAGCGATTTGGTGTTTTTCCAGAATGGGATGCTGGAGCCATGGTTTCACAGCAAAG GACTGGGTGATGCTGGCCAAGTTTTGGCCTACTTTGCAGTTTCCAAGCTTGGAGAACCCCCCACTGATGGCAAAACTGACACCAACCCTGAGGGCTTGAC CGCTGCTTTTGGAAAATGGGCGCCTGCTATTGCTGAAAGATTGGTTTCCGGTGGCCTATCTTGCAAGGTGTCCAGCCTCATCAAAGAACTTGCCTCTGCG GCAGCTACTGAGAAAGGCATTGTGTTTGATGAAAGTATCGAGGAAAGCTTATGTGCTTATTCAAGGGCTGTTGCTCACTTTCCAACCGCAGTTAAAGAGG TGATCTTCCTTTTCGACTGTACAAACTTTTGCCTTGTTAGAAAAGTTGGAATCACTCATCTCGACTCGACTGACCCTGGAGGTAAAACTATTTTTTTGCA GTTCAAATGGAGGAATGGCTGGTTTTATTCCCTCTCCGAGAAAGCGATAGCTGAAGGAAAACCCGATCCGTGCCCCTTGCATACTACATGGCTTAAGGAG ATAAAAGTCATCTGA
AA sequence Show only first row Show all	>Lus10024094 pacid=23141569 polypeptide=Lus10024094 locus=Lus10024094.g ID=Lus10024094.BGIv1.0 annot-version=v1.0 MAAQTLASSLTNSSLLQPSSNLPRFASRPTFSKARCTISAMAAAPSTIASATKVVPAVIVGGGRVGRALQDMGTGQDYMVKRGDPVPADFQGPILVCTRN DDLDAVLQATPKSRWSDLVFFQNGMLEPWFHSKGLGDAGQVLAYFAVSKLGEPPTDGKTDTNPEGLTAAFGKWAPAIAERLVSGGLSCKVSSLIKELASA AATEKGIVFDESIEESLCAYSRAVAHFPTAVKEVIFLFDCTNFCLVRKVGITHLDSTDPGGKTIFLQFKWRNGWFYSLSEKAIAEGKPDPCPLHTTWLKE IKVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16080			unknown protein		Lus10024094 [exp]	0	1
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001634 [exp]	1.7	0.9484
AT1G17100			SOUL heme-binding family prote...		Lus10012559 [exp]	2.8	0.9283
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	3.9	0.9210
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030873 [exp]	4.2	0.9251
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10029809 [exp]	4.9	0.9113
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010909 [exp]	5.1	0.9047
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001439 [exp]	5.7	0.9240
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Lus10013078 [exp]	7.9	0.9166
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10020729 [exp]	9.4	0.9083
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000036 [exp]	11.0	0.9037

Compare expression of checked genes

Lus10024094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.