Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80940 198 / 9e-63 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041624 [exp] 325 / 5e-112 AT1G80940 229 / 3e-76 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G041900 [exp] 228 / 3e-74 AT1G80940 250 / 1e-84 unknown protein Potri.003G184925 [exp] 217 / 4e-70 AT1G80940 253 / 1e-85 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024095 pacid=23141513 polypeptide=Lus10024095 locus=Lus10024095.g ID=Lus10024095.BGIv1.0 annot-version=v1.0 ATGACCAATACCACGACAGACGACAACATACCATCCCGGGGCGCTTCGCAATCCTCGAGTCGCCTCCTCACCAAAACCCGATCCGGCACTCCTCCCACTA AACCTGCATCTGACGCCATCGTCCACCTCTCCTCTGCACTACAATCTGCCTTCGATGCTGGAACAAATAAGATGACCAACAAACCTCGTGGTCAATCTCA GGCAGCGGACTCCGAGATCGACAACAACCAGAGCTCCGGACAAATTGTGAGAACTGGGAGTTCTGCAATGAGTGGTATAGTTAGGATTGAAGAGAAGAAG ATGGTTGAGGGAGGAGATCGAGGAGGAGGAGGAAGTTCTGTTGGTGCTTTGAATGGGTTCGCTCCTGCAACTTCAACCAGGATCTTTTGGAATTCCAGGA AAAGATCAGCTGGTGGTGGAAGGAGCTTTAACAACAAGTTAATGGACGAAACCACCAGCAGTAGCACTCCTCCTCCCAAAACCCAAGATGATGAAAAGAT GCAGGAAGCAACCGAAATAGAAACTGAAATCGAAACTGAAATCCCACAGCTGTCCGAGCGACGAAAGGCTCTCTTCGAACCCCTGGAACTCAACCTCAAC GGCAAACGGCCATCTGCTGAGTCACTGCTCCCACCGCCAGACTTCGATACCGCCAGCTACCCGAAAGGGTGGCTGATCGGTAAGAAGCGAAAGCTTGTGA ATGTGGATGTTGTGGAGAGCATGCGCAGGATAGCTGTCCAGGAAATGAACAGAAAGGACCATGAAATCGATGGGCTTAACGAGCAGTTGGAAGAGGATTC ACGTGTTCTGGAGCACCTGCAGCTACAGGTTCTGGAAGAGAAGAGTAAAAGGGGAGAGGTGGAGAGGGAGAACAGGATGCTACATGAACAGATAAACATG CTGATGAGCATGCTACAGGAAAATGAGGAGGAGCTGGAAGAAGAAGAAGCCCCCAAAGATCACTGA
AA sequence Show only first row Show all	>Lus10024095 pacid=23141513 polypeptide=Lus10024095 locus=Lus10024095.g ID=Lus10024095.BGIv1.0 annot-version=v1.0 MTNTTTDDNIPSRGASQSSSRLLTKTRSGTPPTKPASDAIVHLSSALQSAFDAGTNKMTNKPRGQSQAADSEIDNNQSSGQIVRTGSSAMSGIVRIEEKK MVEGGDRGGGGSSVGALNGFAPATSTRIFWNSRKRSAGGGRSFNNKLMDETTSSSTPPPKTQDDEKMQEATEIETEIETEIPQLSERRKALFEPLELNLN GKRPSAESLLPPPDFDTASYPKGWLIGKKRKLVNVDVVESMRRIAVQEMNRKDHEIDGLNEQLEEDSRVLEHLQLQVLEEKSKRGEVERENRMLHEQINM LMSMLQENEEELEEEEAPKDH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80940			unknown protein		Lus10024095 [exp]	0	1
AT1G80940			unknown protein		Lus10041624 [exp]	1.0	0.9000
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	3.5	0.8350
					Lus10024718 [exp]	3.5	0.8100
AT1G13310			Endosomal targeting BRO1-like ...		Lus10034281 [exp]	4.5	0.8097
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10000864 [exp]	9.8	0.7937
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10005462 [exp]	10.0	0.7987
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	11.0	0.7776
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10018834 [exp]	12.0	0.7917
AT4G38810			Calcium-binding EF-hand family...		Lus10012178 [exp]	13.4	0.7755
AT2G46220			Uncharacterized conserved prot...		Lus10012651 [exp]	14.7	0.7930

Compare expression of checked genes

Lus10024095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.