Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23300 647 / 0 PYRD pyrimidine d (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041623 [exp] 735 / 0 AT5G23300 650 / 0.0 pyrimidine d (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089700 [exp] 677 / 0 AT5G23300 751 / 0.0 pyrimidine d (.1) Potri.007G074101 [exp] 306 / 8e-104 AT5G23300 282 / 1e-94 pyrimidine d (.1) Potri.007G074201 [exp] 291 / 8e-97 AT5G23300 411 / 3e-144 pyrimidine d (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01180 [flax] [poplar] DHO_dh Dihydroorotate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10024096 pacid=23141571 polypeptide=Lus10024096 locus=Lus10024096.g ID=Lus10024096.BGIv1.0 annot-version=v1.0 ATGGCGTCAATGCATCTTAAGAGGTTACTCGGAGGGGTTTTGCATAAAGCGGCCGTCTATGCTCACCCTGTAGCTGCCCGACGAGGAATCGGAAGTGCAG CAGCCGAATTCAGACGCTTTTCTTCATCAACTGCTTCAAAAACCGCTTCGAAAATTCCTCACTTGCCCAAAAAGGGAAGGTTGTTATCAGGGGGATTTAT TGGACTGGTCATAGCTGGAGGAGCTTATGTTAGTACAGTTGATGAAGCTACTTTCTGTGGCTGGCTGTTTGACGCAACAAAACTTGTGAATCCATTCTTC GCCCTGCTTGATCCTGAGACTGCTCATAGACTAGCTGTGTCTGCTGCTGCTCGGGGTTGGGTTCCGAGGGAGAAGAGACCTGATGCACCAATTTTGGAAC TGGAAGTATGGGGAAGGAAATTCTCAAACCCTGTAGGTCTTGCTGCTGGATTCGATAAAAATGCTGAGGCGGTTGAAGGCCTACTTGCTGTGGGGTTTGG CTTCATTGAGGTTGGCTCTGTCACCCCAGTACCGCAACAAGGAAATCCAAAGCCTCGTATCTTTAGGTTGCGTGAAGAAAGGAAGTTGGCTGAAACTTCA AGCACGTCACCTCCATCTTCTGATGATGTCAAACAGGGTGGGAAAGCTGGACCTGGAATTCTGGGGGTTAATCTTGGAAAGAACAAAGCAAGTGAAGATG CTGCTTCGGATTATGTACAAGGCGTGCACACATTATCACAGTATGCTGATTACTTGGTTATTAATGTTTCATCGCCGAATACCCCTGGCCTGCGTACCCT TCAGGGTAGAAAACAGTTGAAGGACCTTGTTAAGAAGATTCAAGCTGCTCGTGATGAAATGCAATGGGGTGAAGAGGGTCCACCTCCTTTGCTGGTCAAA ATTGCACCTGACTTGTCTAAAGAAGACCTGGAAGATATTGCAGCGGTTGCTCTTGCTCTTCGTTTGGATGGACTGATCATCTCAAATACAACAATACAAA GGCCTGATTCCGTGAACGAAAACCCAGTGGCTGAGGAAACTGGTGGTCTAAGTGGAAAGCCTCTTCTTGATCTCTCTACGAATATTTTGAAGGAGATGTA TATGTTAACAAGGGGAAAAATTCCTCTAATAGGCTGCGGAGGTGTTAGCAGCGGTGAGGATGCATACAAGAAAATAAGAGCTGGAGCAACTCTTGTACAG CTTTATACAGCGTTTGCTTATGGTGGACCTGCATTAATTCCTCGAATAAAGGTTGAATTAGCAGAATGCTTGGAACGAGACGGGTTCAAGTCAGTCATCG AGGCTGTTGGTGCAGACCACAGATGA
AA sequence Show only first row Show all	>Lus10024096 pacid=23141571 polypeptide=Lus10024096 locus=Lus10024096.g ID=Lus10024096.BGIv1.0 annot-version=v1.0 MASMHLKRLLGGVLHKAAVYAHPVAARRGIGSAAAEFRRFSSSTASKTASKIPHLPKKGRLLSGGFIGLVIAGGAYVSTVDEATFCGWLFDATKLVNPFF ALLDPETAHRLAVSAAARGWVPREKRPDAPILELEVWGRKFSNPVGLAAGFDKNAEAVEGLLAVGFGFIEVGSVTPVPQQGNPKPRIFRLREERKLAETS STSPPSSDDVKQGGKAGPGILGVNLGKNKASEDAASDYVQGVHTLSQYADYLVINVSSPNTPGLRTLQGRKQLKDLVKKIQAARDEMQWGEEGPPPLLVK IAPDLSKEDLEDIAAVALALRLDGLIISNTTIQRPDSVNENPVAEETGGLSGKPLLDLSTNILKEMYMLTRGKIPLIGCGGVSSGEDAYKKIRAGATLVQ LYTAFAYGGPALIPRIKVELAECLERDGFKSVIEAVGADHR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23300		PYRD	pyrimidine d (.1)		Lus10024096 [exp]	0	1
AT3G23940			dehydratase family (.1.2)		Lus10034822 [exp]	1.4	0.9420
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	7.5	0.9363
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	7.7	0.9393
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10019766 [exp]	8.7	0.9219
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	11.3	0.9412
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	13.3	0.9301
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	15.5	0.9322
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10040434 [exp]	15.5	0.9170
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	15.9	0.9307
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10006901 [exp]	18.7	0.9291

Compare expression of checked genes

Lus10024096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.