Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24100 335 / 3e-110 ASG1 ALTERED SEED GERMINATION 1, unknown protein AT4G30780 296 / 5e-94 unknown protein AT3G05770 116 / 2e-28 unknown protein AT1G54300 106 / 2e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041622 [exp] 884 / 0 AT2G24100 351 / 1e-116 ALTERED SEED GERMINATION 1, unknown protein Lus10035819 [exp] 374 / 8e-124 AT4G30780 514 / 3e-177 unknown protein Lus10036602 [exp] 371 / 8e-123 AT4G30780 511 / 5e-176 unknown protein Lus10010920 [exp] 156 / 6e-43 AT2G24100 184 / 8e-54 ALTERED SEED GERMINATION 1, unknown protein Lus10029847 [exp] 144 / 2e-36 AT2G24100 160 / 6e-42 ALTERED SEED GERMINATION 1, unknown protein Lus10029846 [exp] 135 / 4e-34 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein Lus10020694 [exp] 132 / 3e-33 AT2G24100 145 / 5e-38 ALTERED SEED GERMINATION 1, unknown protein Lus10007704 [exp] 61 / 3e-11 AT4G30780 74 / 1e-16 unknown protein Lus10024256 [exp] 62 / 7e-11 AT2G24100 59 / 3e-10 ALTERED SEED GERMINATION 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185050 [exp] 449 / 1e-154 AT2G24100 392 / 2e-132 ALTERED SEED GERMINATION 1, unknown protein Potri.001G041800 [exp] 427 / 6e-146 AT2G24100 363 / 5e-121 ALTERED SEED GERMINATION 1, unknown protein Potri.018G102800 [exp] 397 / 3e-133 AT4G30780 501 / 1e-172 unknown protein Potri.006G180500 [exp] 374 / 2e-124 AT4G30780 503 / 2e-173 unknown protein Potri.013G009000 [exp] 187 / 4e-53 AT2G24100 202 / 6e-59 ALTERED SEED GERMINATION 1, unknown protein Potri.005G014600 [exp] 167 / 9e-46 AT2G24100 167 / 5e-46 ALTERED SEED GERMINATION 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024097 pacid=23141510 polypeptide=Lus10024097 locus=Lus10024097.g ID=Lus10024097.BGIv1.0 annot-version=v1.0 ATGGTTCAGATGGTCAGCTCTTCCCCCCCTGGACTGAAATTAGAGGCGGAAGCTTCCGCCGCCGGCGGGAGCTCCACCTCAATGGTGGGTCGTCTCCAGC TTGGCCGACTTAACAAACGTGCAAAGCTCGACTCTTCTCTTCAACTGCAGGCACGGCATGAGCCACTTGAAGAACCTAGTCCTTTGGGTCTACGGCTGAA AAAGACTCCATCTTTCTTAGATTTAGTTCAATCCAAGCTCTCTCATGGAGGGAAGAAGGATCATCACAATAATAAGGGCATCACCAACAATTCTGCTGAC GGTAACAGACTCAAAGCTTCCAACTTTCCCGCTTCACTTCTCAGAATTGGGGATTGGGAGTACAAATCCAGGTACGAAGGGGATTTGGTAGGCAAATGTT ATTTTGCAAAGCATAAGCTGGTGTGGGAAGTTCTGGATGGTGGGCTTAAGAACAAGATTGAAATCCAGTGGTCTGATATCGTGGCTATCATGGGCGATTT CTCAGAAGATGATGATCAACCCGAGACCTTGAATGTTGTGTTATCGAGACCGCCGCTTTTCTTTAGGGAGACAAATCCCCAACCTAGGAAGCACACTTTG TGGCAGGCCTCCACAGATTTCACTGGTGGGCAAGCCAGCATAAACAAGCAACATTATCTGGAATGCCAACATGGCTTCTTACGGAAGCACTTTGAGAAAC TCGTACAGTGCGATCCTCGTCTCAACATCCTTAGTCAGAAACGTGAGATGGTTTCGTCGGCATCCCCATATTTCGAACACACAGCTTCTGCATTTGAGGA CTTGAATGAACCTAGTGAAGTTATGGATGTGAAGTCAGAGGAAGGACTTTCTGTCTTTGCAACGCCCGATGTGCCATCGACTTCTCAGAAGAATCCTTCA ACTATCACAGGTATCGATACTGTCGAAGGAGTCAAAGTCAACAGCTTGGAAAGAAACGAAGGGAACATTCCAGGCCATTGGCATCGACCTAATCCACAGA GAGTTCAACCATCCATGTCAATTGATGACCTTGTGAACTACATTGGACACTGCACTTCAGAGCTTAAGGGCGACAACAGCATTCTGGAAGAGATTACTCA GCACTTGCTAAGTGATTCTCAGTTTACATCAGACGAGGAATCCATCATGTCGAGGGTCAATTCTTTCTGCTGCCTGCTGCAGAAAGATCCAGGAGCTGCA CGGAATCTCCTCGTGAAAAGCCAGAGCAATATCGAGACTGGCAGCAGTGGATGGACAGCTAGAAGTAACGAACCAACTCCACTACAACCAGCATCTCAAA TGAAGCCTGGAGAATCGTTTCTTATATCCGAAAGTCAGGAGCGCAGAAGCGTCCTTCGCTACAAGGCTGCTCCTCTAATGTCCCGGAATAATTCTGGTGG AGAGCTGCTTAACCTTCCGAGGATCGCCTCTCTGCCACGGTTCCTGCCGAACATGTAA
AA sequence Show only first row Show all	>Lus10024097 pacid=23141510 polypeptide=Lus10024097 locus=Lus10024097.g ID=Lus10024097.BGIv1.0 annot-version=v1.0 MVQMVSSSPPGLKLEAEASAAGGSSTSMVGRLQLGRLNKRAKLDSSLQLQARHEPLEEPSPLGLRLKKTPSFLDLVQSKLSHGGKKDHHNNKGITNNSAD GNRLKASNFPASLLRIGDWEYKSRYEGDLVGKCYFAKHKLVWEVLDGGLKNKIEIQWSDIVAIMGDFSEDDDQPETLNVVLSRPPLFFRETNPQPRKHTL WQASTDFTGGQASINKQHYLECQHGFLRKHFEKLVQCDPRLNILSQKREMVSSASPYFEHTASAFEDLNEPSEVMDVKSEEGLSVFATPDVPSTSQKNPS TITGIDTVEGVKVNSLERNEGNIPGHWHRPNPQRVQPSMSIDDLVNYIGHCTSELKGDNSILEEITQHLLSDSQFTSDEESIMSRVNSFCCLLQKDPGAA RNLLVKSQSNIETGSSGWTARSNEPTPLQPASQMKPGESFLISESQERRSVLRYKAAPLMSRNNSGGELLNLPRIASLPRFLPNM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	0	1
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	1.0	0.9575
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10041622 [exp]	1.4	0.9544
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	2.0	0.9355
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	3.0	0.9417
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	6.3	0.9242
AT3G47160			RING/U-box superfamily protein...		Lus10037053 [exp]	7.3	0.9303
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	9.5	0.9313
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	9.5	0.9102
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025093 [exp]	9.9	0.9300
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Lus10009909 [exp]	9.9	0.9240

Compare expression of checked genes

Lus10024097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.