Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79720 258 / 5e-81 Eukaryotic aspartyl protease family protein (.1) AT5G10770 137 / 7e-36 Eukaryotic aspartyl protease family protein (.1) AT5G10760 115 / 9e-28 Eukaryotic aspartyl protease family protein (.1) AT1G25510 113 / 4e-27 Eukaryotic aspartyl protease family protein (.1) AT3G59080 112 / 9e-27 Eukaryotic aspartyl protease family protein (.1.2) AT1G01300 103 / 6e-24 Eukaryotic aspartyl protease family protein (.1) AT1G09750 103 / 7e-24 Eukaryotic aspartyl protease family protein (.1) AT3G61820 99 / 3e-22 Eukaryotic aspartyl protease family protein (.1) AT2G42980 95 / 9e-21 Eukaryotic aspartyl protease family protein (.1) AT3G20015 94 / 1e-20 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041621 [exp] 386 / 1e-130 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 140 / 1e-36 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 124 / 7e-31 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10000265 [exp] 109 / 3e-26 AT5G10770 173 / 3e-49 Eukaryotic aspartyl protease family protein (.1) Lus10020099 [exp] 106 / 5e-25 AT5G10770 149 / 4e-40 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 104 / 4e-24 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10039503 [exp] 94 / 5e-21 AT3G54400 477 / 3e-169 Eukaryotic aspartyl protease family protein (.1) Lus10008654 [exp] 95 / 7e-21 AT3G54400 563 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024148 [exp] 93 / 7e-21 AT3G54400 476 / 7e-169 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G041700 [exp] 285 / 5e-90 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G185175 [exp] 273 / 1e-86 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232500 [exp] 170 / 5e-48 AT5G10770 334 / 2e-110 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 145 / 8e-39 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 133 / 3e-34 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 132 / 7e-34 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 132 / 7e-34 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 130 / 4e-33 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 125 / 3e-31 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 113 / 3e-27 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10024098 pacid=23141606 polypeptide=Lus10024098 locus=Lus10024098.g ID=Lus10024098.BGIv1.0 annot-version=v1.0 ATGCTATCTTTTCTCACTGTTATCATCAAGCTGCTGTTGTTGTTTTCCCTTCTCTGTAGTAATAATGAAGCTGCCGTAGGGAAGAGAGTTCCTCTGGCTA ATCTGTTGGAAGAACACACCCTATGGAAGCAGCTATTGATGAGCAAGAGCTTCAATCATTCTTCAAGCTCATCATGTCTTCCCCACAAAGCAAGACATAC AGAGGGGGCAACCATCCTGGAAATGAAGCACGAGGATTTGTGCGCATCATCAGCCACAATTCAGGACTGGACCAAGAAGCAACACAATACCCTCATTCTG GACAATCTTCGGGTTCAGTCTATTCAGTCTAGAATGCAAAGTACCAACCTTTTCAAACAAGATGCCAGTAGTAACTTTACTGGCACAACTCAAATCCCAT TGGCATCAGGAATAAGACTTGAAACCTTGAACTACATAGTCACTGTGCAGCTTGGAGGGAAGCAACTCACAGTAATAATAGACACTGGAAGTGACTTGAC ATGGGTTCAATGCCAGCCCTGCAGGCTTTGTTACAACCAAAAAGATCCTCTCTTTGACCCTTCCATCCCTCCATATTTCCAGAGGCTTCCCTGCAATTCA TCAGCTTTGAACAATAATGATTTGTTTGGAGGAGCTTCAGGTCTGATGGGGTTGGGAAGGAGTAGCCTTTCATTGGTTTCTCAATCTGAATCCATCTATG GAGGTGTTTTCTCTTACTGCTTGCCCACAACAGCACCTGATGCTTCTGGTCCATTAGCGTTTGGAGCCAATACCACAGTTTACAATAATTTTACTCCAAT TTCTTACACAAGAATGGTCCCTAATCCCCAGCTCCCAACCTTCTACTTCCTCAATCTTACCGGGATGACCGTAGGTGGTAAGTATCTCCCTAGTAGTTTT GGCAGTGGGATTCTGATTGATTCTGGAACAGTGATATCAAGGTTCCCCCCTTCACTCTACAATGCTGTCAAAGGCGAGTTTTTGAGACGGTTCGTCGGGG TTCCCTCTGCGCCGAGGTTTTCAATCCTGGACACATGCTTCAATCTGACAGGGTACCAGGAGATTGATGTTCCCACCATTAGCATGAACTTCGAATGGAA TGTGGCACTGGAAGCGGATCTGAATGGAGTTTTCTATTTTGCAAAGGCTGATGCGTCTCAGGTATGCCTCGCCATTGCGAGCCTTGCTTATGACGATGAG ATTGGGATAGTTGGGAACTATCAGCAGAGGAACCAGAGGGTTGTCTATGATATCAGAAAGTCATTGGTGGGATTTGCAGCAGAAACTTGCAGTTTCAGCT AA
AA sequence Show only first row Show all	>Lus10024098 pacid=23141606 polypeptide=Lus10024098 locus=Lus10024098.g ID=Lus10024098.BGIv1.0 annot-version=v1.0 MLSFLTVIIKLLLLFSLLCSNNEAAVGKRVPLANLLEEHTLWKQLLMSKSFNHSSSSSCLPHKARHTEGATILEMKHEDLCASSATIQDWTKKQHNTLIL DNLRVQSIQSRMQSTNLFKQDASSNFTGTTQIPLASGIRLETLNYIVTVQLGGKQLTVIIDTGSDLTWVQCQPCRLCYNQKDPLFDPSIPPYFQRLPCNS SALNNNDLFGGASGLMGLGRSSLSLVSQSESIYGGVFSYCLPTTAPDASGPLAFGANTTVYNNFTPISYTRMVPNPQLPTFYFLNLTGMTVGGKYLPSSF GSGILIDSGTVISRFPPSLYNAVKGEFLRRFVGVPSAPRFSILDTCFNLTGYQEIDVPTISMNFEWNVALEADLNGVFYFAKADASQVCLAIASLAYDDE IGIVGNYQQRNQRVVYDIRKSLVGFAAETCSFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79720			Eukaryotic aspartyl protease f...		Lus10024098 [exp]	0	1
AT5G15070			Phosphoglycerate mutase-like f...		Lus10008307 [exp]	1.0	0.9130
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	3.5	0.9029
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	3.9	0.8558
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	4.7	0.9068
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10015231 [exp]	4.9	0.8887
AT4G28240			Wound-responsive family protei...		Lus10031617 [exp]	5.9	0.8932
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10037817 [exp]	6.9	0.8554
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	10.6	0.8684
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10019286 [exp]	11.5	0.8264
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	11.7	0.8954

Compare expression of checked genes

Lus10024098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.