Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16070 420 / 1e-145 TUB AtTLP8 tubby like protein 8 (.1.2) AT2G18280 78 / 1e-15 TUB AtTLP2 tubby like protein 2 (.1.2) AT2G47900 67 / 4e-12 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G47270 66 / 2e-11 TUB AtTLP6 tubby like protein 6 (.1.2) AT1G25280 65 / 2e-11 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G76900 65 / 4e-11 TUB AtTLP1 tubby like protein 1 (.1.2) AT3G06380 62 / 2e-10 TUB ATTLP9 tubby-like protein 9 (.1) AT5G18680 62 / 3e-10 TUB AtTLP11 tubby like protein 11 (.1) AT1G53320 61 / 4e-10 TUB AtTLP7 tubby like protein 7 (.1) AT1G43640 59 / 2e-09 TUB AtTLP5 tubby like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041617 [exp] 724 / 0 AT1G16070 416 / 2e-144 tubby like protein 8 (.1.2) Lus10010833 [exp] 70 / 7e-13 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10028309 [exp] 69 / 2e-12 AT2G18280 481 / 1e-169 tubby like protein 2 (.1.2) Lus10012803 [exp] 69 / 2e-12 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3) Lus10033977 [exp] 69 / 3e-12 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10018884 [exp] 68 / 4e-12 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10033208 [exp] 67 / 7e-12 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10010645 [exp] 67 / 9e-12 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10028579 [exp] 67 / 1e-11 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G041400 [exp] 527 / 0 AT1G16070 436 / 3e-152 tubby like protein 8 (.1.2) Potri.003G185401 [exp] 89 / 3e-21 AT1G16070 57 / 1e-10 tubby like protein 8 (.1.2) Potri.005G192300 [exp] 71 / 3e-13 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.010G031000 [exp] 70 / 6e-13 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.008G195200 [exp] 69 / 1e-12 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G192400 [exp] 69 / 1e-12 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 68 / 3e-12 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.011G109300 [exp] 67 / 8e-12 AT1G53320 504 / 5e-180 tubby like protein 7 (.1) Potri.002G034600 [exp] 66 / 1e-11 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.007G023400 [exp] 66 / 1e-11 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family
Representative CDS sequence Show only first row Show all	>Lus10024102 pacid=23141570 polypeptide=Lus10024102 locus=Lus10024102.g ID=Lus10024102.BGIv1.0 annot-version=v1.0 ATGGCCAAATTAGACAGACCCACCTTGCCAAACCACTCCTCTTCCCTATCTTCAAACATTCCACACAATCACCACCACCACAGCTGCAGCGACGGAGACG TTCTCGCTGCAGCCAGAGCTTTCACGGCGGCAGCGGCGATGGACAACAAAGAGAACATCTGCTGTAGCATCAGCGACAACAAGGATAAGGAAAACGTTGC TATTTCTGTTTTGGGAAATTCAAATTCAAACGCAAAGCCTTTTTCTTGTTGTACGAACGGCTCTGTAGTTAGCTCGGGTATGCAGAAGAAGAAGAAGTCT CTATCTACGGGGAGAGTAGTTTTGAAGGCGTCGTCGCTGCAGCTTTGTATGCAGATGAATGAGCCCGATAGGGCTTTCATGCCCAAGATTTGGGACTCTT CTTGTTTTCCTCCAGCAGAATCTGAAGAACAACACTCTTCCTCCTTGAACATTTGGGACTATTCCGATTCTGAGGCGGCTCCCGCTTCTTCATGGTCCAC TCTCCCCAATAGGGCTTTGCTGTGCAGGCCATTGCCACTGGATGTTGAAAAATGCACTTGTGTCATAGTCAAAGAATCCTCTCCTGATGGTTTAGATGCT GGCACTCTCTACTCCCTTTACACCAATGAAGGGCAAGGGAGGCAGGATAGGAAGCTGGCTATGGCCTACCATAGGCGTAACGGCGGGAGGTCTGAGTTTA TGGTTGCTCAGAAACTTAAAGGATTCGTGTCTTGTTCGGATGACAGCTTTGTTGGGAATGTCACTGCTAATCTCATGGGTTCCAAGTACCACATATGGAA TCAGAATCAGGTTCCTAATGCTTCAGGCAAACAATGGGGGAATCCGCTTCTAGGTGTTGTCACGTTTGTACCTACCATTGGCACATGGACTGGAAGTTAC AGAAAGATGAAAGCATATATCCCCAAGCACGAGTCTATGCAACTCAAGAACTATACTCAGGTTCAGCACATCAATGGTCTACCAAAGGACTGGGAGGAGA GGATGAACAAAGTCCACAAGCTACATTCCAGGACACCTCACTACAACACTGTGACAAAGCAGCATGAGTTAGACTTTAGAGACACGGGAAAACCTGGAGT AAAGATCCAAAGCTCGGTCAAGAACTTCCAGCTGACATTAGAGGAAAATGGGAAGCAGACGATCTTGCAGCTTGGAAGGGTAGGAAAATCCAAGTTTGAG ATGGATTTCAGGTATCCACTAAATGGCTACCAAGCGTTCTGCATATGCTTGGCTTCAATTGATTCGAAACTGTGCTGTGCTGTTTGA
AA sequence Show only first row Show all	>Lus10024102 pacid=23141570 polypeptide=Lus10024102 locus=Lus10024102.g ID=Lus10024102.BGIv1.0 annot-version=v1.0 MAKLDRPTLPNHSSSLSSNIPHNHHHHSCSDGDVLAAARAFTAAAAMDNKENICCSISDNKDKENVAISVLGNSNSNAKPFSCCTNGSVVSSGMQKKKKS LSTGRVVLKASSLQLCMQMNEPDRAFMPKIWDSSCFPPAESEEQHSSSLNIWDYSDSEAAPASSWSTLPNRALLCRPLPLDVEKCTCVIVKESSPDGLDA GTLYSLYTNEGQGRQDRKLAMAYHRRNGGRSEFMVAQKLKGFVSCSDDSFVGNVTANLMGSKYHIWNQNQVPNASGKQWGNPLLGVVTFVPTIGTWTGSY RKMKAYIPKHESMQLKNYTQVQHINGLPKDWEERMNKVHKLHSRTPHYNTVTKQHELDFRDTGKPGVKIQSSVKNFQLTLEENGKQTILQLGRVGKSKFE MDFRYPLNGYQAFCICLASIDSKLCCAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10024102 [exp]	0	1
AT1G75680		ATGH9B7	glycosyl hydrolase 9B7 (.1)		Lus10025965 [exp]	12.7	0.6051
AT5G62360			Plant invertase/pectin methyle...		Lus10031711 [exp]	15.9	0.7011
AT1G72100			late embryogenesis abundant do...		Lus10041310 [exp]	26.6	0.6066
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10020124 [exp]	41.0	0.5947
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10000974 [exp]	102.6	0.5621
AT1G76750			Protein of unknown function (D...		Lus10025591 [exp]	160.8	0.4896
AT1G30710			FAD-binding Berberine family p...		Lus10038676 [exp]	180.8	0.4920

Compare expression of checked genes

Lus10024102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.