Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041616 [exp] 122 / 9e-36 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024104 pacid=23141561 polypeptide=Lus10024104 locus=Lus10024104.g ID=Lus10024104.BGIv1.0 annot-version=v1.0 ATGGGAGGAGCAGCCATGATCTACTTCTCTTCCCTTATTCTAATCCTAGCCTTTCTCGCCCTATCATCTCAAGCTAGAACTTTCCCAGGTGAGGGAAAAG CTGTGGTGATAGTTTACGGGAGGAGCTCATCAAGTCTACACCTCGACCTATCGGCCATACTCTCAGCTGCTATTAATAATGAAGATGTTATGGTGGAAGC ACCAGCGAGGCCGAAGCCTAAACCACCATCTCCCAAGCCGGCTTCCCCTATAGCTGAGCTTACTTCATCATCTACGTCTTGGTCGTCGTCCACTGATGAT GGTGTTATTACGATGGTGACCGGTACAGCGGGTACTGTACAAGGAAGAAAGGTGTTAACACCTCCGCCGTCTCCAAAGCCTGCCTCCCCTACCCATTACG TCGCTCCTCATCATCACGAGCGCTCTCCTCCTGCGGAGGCCGGGGGATCGTATTACTATTCCTCATCATCATAA
AA sequence Show only first row Show all	>Lus10024104 pacid=23141561 polypeptide=Lus10024104 locus=Lus10024104.g ID=Lus10024104.BGIv1.0 annot-version=v1.0 MGGAAMIYFSSLILILAFLALSSQARTFPGEGKAVVIVYGRSSSSLHLDLSAILSAAINNEDVMVEAPARPKPKPPSPKPASPIAELTSSSTSWSSSTDD GVITMVTGTAGTVQGRKVLTPPPSPKPASPTHYVAPHHHERSPPAEAGGSYYYSSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024104 [exp]	0	1
					Lus10042963 [exp]	1.0	0.9710
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10014821 [exp]	1.4	0.9572
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025322 [exp]	3.9	0.9178
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10016710 [exp]	4.9	0.9308
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	5.9	0.9138
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10036497 [exp]	6.0	0.9217
AT3G19970			alpha/beta-Hydrolases superfam...		Lus10010171 [exp]	9.2	0.8842
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018915 [exp]	9.8	0.9160
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10036695 [exp]	13.2	0.8763
AT2G22790			unknown protein		Lus10011575 [exp]	14.0	0.8595

Compare expression of checked genes

Lus10024104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.