Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00420 68 / 3e-14 Double-stranded RNA-binding domain (DsRBD)-containing protein (.1), Double-stranded RNA-binding domain (DsRBD)-containing protein (.2), Double-stranded RNA-binding domain (DsRBD)-containing protein (.3) AT1G80650 62 / 5e-12 RTL1 RNAse THREE-like protein 1 (.1) AT5G20320 61 / 9e-11 DCL4, ATDCL4 dicer-like 4 (.1.2) AT1G01040 41 / 0.0003 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019587 [exp] 57 / 1e-09 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10030177 [exp] 44 / 6e-05 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10005141 [exp] 41 / 0.0003 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G179700 [exp] 72 / 7e-16 AT1G80650 86 / 4e-21 RNAse THREE-like protein 1 (.1) Potri.006G188800 [exp] 52 / 9e-08 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.002G181400 [exp] 40 / 0.0009 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10024106 pacid=23141449 polypeptide=Lus10024106 locus=Lus10024106.g ID=Lus10024106.BGIv1.0 annot-version=v1.0 ATGGCATTTCGCGAGGCTTACGACTTGGCTTTCGCCCCAAAATCAATAAACCCGAGTTTCGCTAACGCTGAGGGGATGAAGTTGGAAGATGAAGCGAATT GCAAAACGGATCCTCTAGCGGGCACAATTACTTGGGCGGTGGAGGGCATCAGCAACTCCTGCAAAAACAAAGGTATAGTTATGGCTGATAGTAAAAGTGG AGCCGTATCTGAATCCTATGCCCTCGGGGTGGCAAATGTTGTTTCGGAAAAACAAATGTTGCATCAAGTTTGTTCAGTTAAACACTGGAAGCCTCCTGTA TATGAATGGTACCCAGAGGCCGGTCCTTCCCATAGGATGATGTTTACTTGTAAGGTCATGGTAGAGGTTGAAGTTGAAGGAGCAGAGTCGTCTACAACCT TGGAGTGCTATAGCAATCCAATGTATAATAAGAAAGCAGCAGCAGAGCATGCGTCTTCAGGAGCTATTTGGTGTTTAAGCCAGCTTGGATGCTTACCTGT TGGACCAAATGCTAACAAGAGTAAAAGTACAGGTAACAATAAGAAGCTGAAAATAGATGGTGAGTACATGTCATGA
AA sequence Show only first row Show all	>Lus10024106 pacid=23141449 polypeptide=Lus10024106 locus=Lus10024106.g ID=Lus10024106.BGIv1.0 annot-version=v1.0 MAFREAYDLAFAPKSINPSFANAEGMKLEDEANCKTDPLAGTITWAVEGISNSCKNKGIVMADSKSGAVSESYALGVANVVSEKQMLHQVCSVKHWKPPV YEWYPEAGPSHRMMFTCKVMVEVEVEGAESSTTLECYSNPMYNKKAAAEHASSGAIWCLSQLGCLPVGPNANKSKSTGNNKKLKIDGEYMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00420			Double-stranded RNA-binding do...		Lus10024106 [exp]	0	1
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	4.5	0.8346
AT2G44850			unknown protein		Lus10028204 [exp]	7.5	0.8256
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	7.5	0.8353
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10020392 [exp]	7.7	0.8286
AT5G46030			unknown protein		Lus10015293 [exp]	18.2	0.8151
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10009571 [exp]	19.3	0.8102
AT1G56423			unknown protein		Lus10029844 [exp]	21.2	0.8028
AT4G17250			unknown protein		Lus10008508 [exp]	21.4	0.7874
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	22.6	0.7649
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10014267 [exp]	24.7	0.7748

Compare expression of checked genes

Lus10024106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.