Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12750 342 / 1e-116 ZIP1 zinc transporter 1 precursor (.1) AT1G05300 315 / 6e-106 ZIP5 zinc transporter 5 precursor (.1.2) AT2G32270 295 / 2e-98 ZIP3 zinc transporter 3 precursor (.1) AT5G62160 290 / 2e-96 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1) AT1G31260 280 / 5e-92 ZIP10 zinc transporter 10 precursor (.1) AT4G19680 266 / 4e-87 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT4G19690 254 / 2e-82 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT2G04032 254 / 3e-82 ZIP7 zinc transporter 7 precursor (.1) AT1G10970 252 / 1e-80 ATZIP4, ZIP4 zinc transporter 4 precursor (.1) AT1G60960 237 / 8e-75 ATIRT3, IRT3 iron regulated transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041613 [exp] 616 / 0 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10041647 [exp] 587 / 0 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10040615 [exp] 284 / 6e-94 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10006935 [exp] 273 / 5e-90 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10014062 [exp] 263 / 1e-85 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10014063 [exp] 248 / 6e-80 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1) Lus10019854 [exp] 227 / 8e-73 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10031307 [exp] 127 / 2e-35 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10031099 [exp] 108 / 1e-28 AT1G05300 114 / 2e-31 zinc transporter 5 precursor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G006800 [exp] 419 / 4e-147 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.006G006600 [exp] 415 / 8e-146 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.010G173300 [exp] 362 / 2e-124 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.008G083100 [exp] 347 / 2e-118 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1) Potri.001G160400 [exp] 323 / 2e-109 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.010G134300 [exp] 318 / 2e-107 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.015G117900 [exp] 298 / 2e-99 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.015G117700 [exp] 291 / 5e-97 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.010G135400 [exp] 267 / 2e-87 AT2G04032 325 / 4e-110 zinc transporter 7 precursor (.1) Potri.006G006900 [exp] 203 / 3e-64 AT1G05300 187 / 2e-58 zinc transporter 5 precursor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10024107 pacid=23141496 polypeptide=Lus10024107 locus=Lus10024107.g ID=Lus10024107.BGIv1.0 annot-version=v1.0 ATGAATCAGCGGCGGCGTTTCCTTTCCGTTCTGTTTGTCCTCTTCCTCCTTGTGATTCCGCCGACACTTGTGCTGGGGGACTGCACGTGCGACGCCGACG AGGGCTCCGACAGAGACCGTTTGGTGGCGCTGAGGTACAAGGTGGCAGCAATCGTGTCGATCCTGGTAGCGGGGGCGGTCGGAGTTTGCTTGCCTGTGTT GGGCCAGAAGGCGATCCCGGCGCTGCACCCGGATAACAACGTCTTCTTCATAGTCAAGGCGTTCGCGGCGGGGGTCATACTCTCCACTGGTTTTATCCAC GTTCTTCCCGATGCTTTCGAAACCCTCACCTCGCCGTGCCTCGACGAAAACCCCTGGGGTAAATTTCCCTTTGCAGGGTTTATCGCCATGGTTGCGGCCA TGGGGACTCTGGCCATCGATTCCTTTGCCACTTCCTACTATACCAGGTCGCATAATAAGGGTTCAGCTCTGTCACCACAGAGGATCACAGATGAAGAGAA GGACGGTGGGCACGTGCAGGTCCACACCCACGCCACTCAGGGCCACTCTCACGGCGCTGTTTTTGCTGCCGGCGACGAGGGTCAAGTACTAATTCGCCAG AGAGTTATCTCCCAGGTATTGGAGGTGGGAATAGTGGTGCACTCAGTGATCATAGGCATATCATTGGGAGCATCTGAAAGTCCCAAAACAATTCGTCCTC TGGTTGCTGCTCTGTCTTTTCATCAATTCTTTGAAGGGATGGGACTTGGAGGCTGCATTTCTCAGGCAAAATTCAAGTCGAGGGTTGTGGCGGTGATGGC CTTCTTCTTTTCGCTAACAACTCCTCTGGGAATTGCGATTGGATTTGGGATATCGAACGTGTACAAGGAGAACAGTCCAACGGCTCTGATAGTGGAAGGG ACATTCAATTCAGCGTCAGCTGGTATTTTGGTATACTTAGCATTGGTTGATCTTTTGGCTGCAGATTTCATGAACCCAAAAGTACAGTCCAGTGGACGTC TTCAAATTGGTGTCCACATCGCTCTTCTGTTGGGCGCTGGTTTCATGTCTTTGCTCGCCATTTGGGCTTAG
AA sequence Show only first row Show all	>Lus10024107 pacid=23141496 polypeptide=Lus10024107 locus=Lus10024107.g ID=Lus10024107.BGIv1.0 annot-version=v1.0 MNQRRRFLSVLFVLFLLVIPPTLVLGDCTCDADEGSDRDRLVALRYKVAAIVSILVAGAVGVCLPVLGQKAIPALHPDNNVFFIVKAFAAGVILSTGFIH VLPDAFETLTSPCLDENPWGKFPFAGFIAMVAAMGTLAIDSFATSYYTRSHNKGSALSPQRITDEEKDGGHVQVHTHATQGHSHGAVFAAGDEGQVLIRQ RVISQVLEVGIVVHSVIIGISLGASESPKTIRPLVAALSFHQFFEGMGLGGCISQAKFKSRVVAVMAFFFSLTTPLGIAIGFGISNVYKENSPTALIVEG TFNSASAGILVYLALVDLLAADFMNPKVQSSGRLQIGVHIALLLGAGFMSLLAIWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10024107 [exp]	0	1
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041613 [exp]	1.0	0.8985
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038178 [exp]	8.5	0.8597
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10008479 [exp]	10.7	0.8185
AT2G15760			Protein of unknown function (D...		Lus10019892 [exp]	14.8	0.8811
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	17.0	0.8705
					Lus10010270 [exp]	18.6	0.8783
AT3G56360			unknown protein		Lus10034235 [exp]	22.7	0.8441
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025324 [exp]	27.7	0.8382
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10024414 [exp]	30.2	0.8389
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031158 [exp]	34.8	0.8640

Compare expression of checked genes

Lus10024107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.