Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12400 452 / 3e-157 ELC, ATELC Ubiquitin-conjugating enzyme/RWD-like protein (.1) AT5G13860 451 / 5e-157 ELC-LIKE, ATELC-LIKE ELCH-like (.1) AT2G38830 105 / 4e-25 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041612 [exp] 712 / 0 AT5G13860 499 / 1e-176 ELCH-like (.1) Lus10026129 [exp] 584 / 0 AT5G13860 485 / 2e-171 ELCH-like (.1) Lus10008690 [exp] 577 / 0 AT3G12400 482 / 4e-170 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034200 [exp] 540 / 0 AT5G13860 457 / 4e-161 ELCH-like (.1) Potri.003G191100 [exp] 500 / 4e-176 AT3G12400 419 / 1e-145 Ubiquitin-conjugating enzyme/RWD-like protein (.1) Potri.002G046200 [exp] 114 / 3e-28 AT2G38830 280 / 9e-93 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0596 [flax] [poplar] VPS23_C PF09454 [flax] [poplar] Vps23_core Vps23 core domain CL0208 [flax] [poplar] UBC PF05743 [flax] [poplar] UEV UEV domain
Representative CDS sequence Show only first row Show all	>Lus10024108 pacid=23141547 polypeptide=Lus10024108 locus=Lus10024108.g ID=Lus10024108.BGIv1.0 annot-version=v1.0 ATGACTGTAGCATATTACCCAAGATTTTCGATCACACGCAAACTTCACCACCTAAGCAAAACCTCACACTCTGGTAACCAGAAAACAGGAAACTTCGCCC TTCTCGTCCGCTATCTACCTCGTCGTCCCTCCTCCTCGATCCTTGCGGCAGTAGCCGCCGCCGCTCGAAACAATAAAATACCCCACCCACCTCCCGCACC TACAGGCCCATCGCCATCGCCGGCAATTCAACAATTCCTCTCATCGGTTCTCTCTCAGCGCGGCCCCTCCGCCCTCCCTTACAACGAAGACACCAAGTGG CTAATCCGGCAACACCTCCTGGCTCTCGTCACCTCTTACCCTTCTCTGGAGCCCAAAACTGCAACCTTCACCCACAACGACGGCCGCTCCGTAAACCTAC TCCAGGCTGACGGCACGATTCCTATGATGTTCCAAGGTGTGACCTACAACATACCGGTCATCATCTGGCTCATGGATTCATACCCTCGCTTCCCTCCTTG CGTCTACGTCAATCCAACTCGCGATATGATCATCAAGCGCCCTCACGCCCACGTCAATCCTTCCGGGTTAGTCTCCGTCCCTTGTCTCCAGAATTGGATC TACCCTAGCTCTAATTTGCTCGATCTGATTCGTGAATTGAGCTCCGTCTTTGGCCGCGATCCCCCTTTGTACGCCCAGCGCCGCCCTAATCCCAACCCTA ACCCTAATCATAATCTTAATCCCAATACCAATCCTAATCCATCCCCTAGGCCTAGTCAAAGTTATGCTACCGATCCTTCGAATTTGTCCCACGCATCAAG CTTTGGATCCATAACAGGGCCTGGACACAGTCCATACCAGCGCCCGATGGCTAGGCCTTATCCTCCATCACCGTACGGAAGTGGCGGAGCTACTCCAGCA CGGCCACATCAGACCGATGATGCTGCGGAGGTTTACAGGAGGAATGCTATCAATAAAATAGTTGAAATGGCTCATGGTGATATGTCACAGTTGAGGAAGG CTAGGGAAGCGGAGATGGAGGGGTTATTCAGTGGGCAGGCTGAATTAAGGAGGAGGGAGGAGGTTCTGAACAGGGGATTGAAGGAGTTGCAGGATGAGAA AGAAGGATTAGAAGCTCAACTACAGGTTGTGTTGATGAACTCGGATGTTGTGGAGGCGTGGGTTAGGGAGAATGAAGGGAAGGCGAAGGGGAATTCGGGG GAGGTGGATGTAGACGGTGCGTTTGAATGTATGGACTCGCTTTCGAAGCAGATGTTAGAATGTACTGCTGCTGATTTAGCTATTGAGGATGTAGTTTATT CCTTAGACAAGGCAGTGCAAGAAGGAGCTTTGCCGTTTGATCAGTACTTGAGGAATGTGAGGTTCTTATCAAGAGATCAATTCTTCCATCGGGCAACTGG GGCTAAAGTTAGAGCAGCGCAGATGCAAGCTCAGGTGGCTACTATGGCCTCTAGGATACAGCAATACGCCTCGTGA
AA sequence Show only first row Show all	>Lus10024108 pacid=23141547 polypeptide=Lus10024108 locus=Lus10024108.g ID=Lus10024108.BGIv1.0 annot-version=v1.0 MTVAYYPRFSITRKLHHLSKTSHSGNQKTGNFALLVRYLPRRPSSSILAAVAAAARNNKIPHPPPAPTGPSPSPAIQQFLSSVLSQRGPSALPYNEDTKW LIRQHLLALVTSYPSLEPKTATFTHNDGRSVNLLQADGTIPMMFQGVTYNIPVIIWLMDSYPRFPPCVYVNPTRDMIIKRPHAHVNPSGLVSVPCLQNWI YPSSNLLDLIRELSSVFGRDPPLYAQRRPNPNPNPNHNLNPNTNPNPSPRPSQSYATDPSNLSHASSFGSITGPGHSPYQRPMARPYPPSPYGSGGATPA RPHQTDDAAEVYRRNAINKIVEMAHGDMSQLRKAREAEMEGLFSGQAELRRREEVLNRGLKELQDEKEGLEAQLQVVLMNSDVVEAWVRENEGKAKGNSG EVDVDGAFECMDSLSKQMLECTAADLAIEDVVYSLDKAVQEGALPFDQYLRNVRFLSRDQFFHRATGAKVRAAQMQAQVATMASRIQQYAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10024108 [exp]	0	1
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10026129 [exp]	1.4	0.8629
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Lus10031630 [exp]	3.5	0.8538
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	3.6	0.8751
AT3G19950			RING/U-box superfamily protein...		Lus10017383 [exp]	4.4	0.8135
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	4.9	0.8570
AT5G44860			unknown protein		Lus10036220 [exp]	9.5	0.8449
AT3G22530			unknown protein		Lus10010549 [exp]	10.4	0.8273
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	14.1	0.8268
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	14.8	0.8266
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034974 [exp]	18.3	0.8247

Compare expression of checked genes

Lus10024108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.