Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12390 199 / 4e-66 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) AT5G13850 184 / 2e-60 NACA3 nascent polypeptide-associated complex subunit alpha-like protein 3 (.1) AT3G49470 181 / 9e-59 NACA2 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) AT4G10480 176 / 8e-57 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1), Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.2) AT1G33040 170 / 9e-55 NACA5 nascent polypeptide-associated complex subunit alpha-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041610 [exp] 251 / 9e-87 AT3G12390 229 / 7e-77 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10026133 [exp] 229 / 6e-79 AT3G12390 204 / 2e-68 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10008687 [exp] 215 / 6e-70 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Lus10032927 [exp] 178 / 1e-57 AT3G49470 260 / 2e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Lus10015579 [exp] 178 / 1e-57 AT3G49470 260 / 1e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034400 [exp] 219 / 5e-74 AT3G12390 204 / 5e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.003G190800 [exp] 219 / 7e-74 AT3G12390 204 / 7e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.006G032000 [exp] 206 / 6e-69 AT3G12390 215 / 2e-71 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.015G003300 [exp] 181 / 6e-59 AT3G49470 172 / 4e-54 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Potri.012G006700 [exp] 172 / 3e-55 AT3G49470 171 / 1e-53 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [flax] [poplar] NAC NAC domain CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10024109 pacid=23141578 polypeptide=Lus10024109 locus=Lus10024109.g ID=Lus10024109.BGIv1.0 annot-version=v1.0 ATGTTGAAGCTGGGAATGAAACCCATGACTGGTGTCAGTCGGGTTACCGTCAAAAAGAGCAAGAACATATTGTTCGTGATCTCAAAGCCTGATGTCTTCA AGAGCCCGACATCAGACACGTACATAGTCTTTGGAGAAGCTAAGATTGAGGACATAAGCTCACAACTACAGTCTCAAGCAGCTGAGCAGTTCAGGGCTCC CGACCTGAGTCATTTGAATGCAAAACCTGAGACTTCTAGCATGGCTCAGGATGACGATGATGATGTAGATGAAACTGGAGTCGAGCCGAAGGATATCGAG TTGGTGATGACACAGGCAGGAGTCACAAGGGCCAAAGCTGTGAGGTCTCTCAAGGCGGCAGATGGAGACATTGTTTCTGCCATCATGGAGCTCACGACCT GA
AA sequence Show only first row Show all	>Lus10024109 pacid=23141578 polypeptide=Lus10024109 locus=Lus10024109.g ID=Lus10024109.BGIv1.0 annot-version=v1.0 MLKLGMKPMTGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDISSQLQSQAAEQFRAPDLSHLNAKPETSSMAQDDDDDVDETGVEPKDIE LVMTQAGVTRAKAVRSLKAADGDIVSAIMELTT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12390			Nascent polypeptide-associated...		Lus10024109 [exp]	0	1
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005883 [exp]	1.0	0.9571
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10027154 [exp]	2.0	0.9349
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	4.9	0.9328
AT5G62290			nucleotide-sensitive chloride ...		Lus10027193 [exp]	7.7	0.9274
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10002651 [exp]	9.2	0.9323
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	9.2	0.9381
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	9.5	0.9401
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10027503 [exp]	9.7	0.9337
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10012916 [exp]	10.2	0.9258
AT5G02610			Ribosomal L29 family protein ...		Lus10024437 [exp]	19.8	0.8563

Compare expression of checked genes

Lus10024109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.