Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54380 390 / 6e-134 AtSAC3C yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) AT3G06290 172 / 2e-46 AtSAC3B yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041609 [exp] 736 / 0 AT3G54380 429 / 3e-149 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Lus10034008 [exp] 164 / 6e-44 AT3G06290 1093 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10012769 [exp] 144 / 6e-37 AT3G06290 1033 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G035700 [exp] 480 / 5e-169 AT3G54380 457 / 3e-160 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Potri.010G028200 [exp] 156 / 4e-41 AT3G06290 1155 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.010G213700 [exp] 44 / 0.0002 AT2G39340 845 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03399 [flax] [poplar] SAC3_GANP SAC3/GANP family
Representative CDS sequence Show only first row Show all	>Lus10024110 pacid=23141511 polypeptide=Lus10024110 locus=Lus10024110.g ID=Lus10024110.BGIv1.0 annot-version=v1.0 ATGGAGCGAAACAAGAATCACCATTACCAAAGTCAAGGCCCTCCTTTTCCTTCTTCGTCTTCTTCCTCCAGGAACTCCACCAATATTTCACGATTTGAAC GGAGCTCAGCGACAGCTAGTACAAGAAGGGCGAATCCTAGGGAAGTCCAGGAGTCGGAGTGGAAACCCAGAAGGCAATCGGCGACAAACCCCAACACTCT GAATGAAAAACCGAAGGGAGGTGTTGGGGAAGAAGGCTCATCCGAACATCTCACACTAACTGGGACTTGCCCTTTTATGTGCCCAGAGGGTGAAAGGGCT CAAAGGGAGCGGCTAAGAGACCTAGCTGTTTTTGAAAGACTCCATGGGAATCCTGCGAAAACATCTCCCAGCTTGGCTGTGAAGAAGTTCTGCAGGACCA TATCTACTATGGAGGGAAAGGAATCGGATCTGCGACCGCTACCTGTCCTTGAAGAGACACTGACTTACCTACTCACATTGTTTGACTCGACAAATCACTC ATTTGAAGCAGTTCACGACTTCATCTTTGATAGGACAAGGTCCATAAGACAAGATCTCAGCATGCAGAACATTATGAACAATAAAGCAATCTACATGTAT GAGAAAATGGTAAAATTTCACGTCATATCTCACCTCAAGCTCCGACATCGCAGCAACAGTCCAACCACTTCTTCAACCCATTACCTCAACATGGAACAGC TCACAAAGGCTATAACATCACTATACAATCTATATGATGTGAATCGAGACAATTCCAATTCGGTTCACAAAAGTGAAGCAGAGTTTCGTTCACTATATGT TCTGCTTCATATAGACTCCAGAAATCAACCGACGGGAGAATCACTTGCTTTATGGTTTCGCCGGATTTCTCGATCGATCATCCAGTCTAAACAAATGTGC TTTGCCCGCAGAGTTCTACGGTCATTTCGACTGGGGAATTATAGGCATTTTCTTTCGACAATAGCTGCTGAAGCATCATGTTTACAATACTGTATTCTTG AACCGTATATCACCGAGGTTAGGGCATTTTCCCTGTCATGTATCAACAATGTTTGCTACAAGCTTCATCCTTACCCTCTGGATCGCTTGTCAAATGTCTT GATAATGGAGGAAGCAGATGTGGAACTTCTGTGCAAAGCTTGTGGTCTTGAGACATTCACAGACGATAATGGGAAGAAGTGGTTGCCTACAAAGCAAGCA ACTTTCACTTCTCCCAAAGACTGTCAAAGCTTTCCGGTTTTGGGGTTAGAACCTTTTGATATCTGA
AA sequence Show only first row Show all	>Lus10024110 pacid=23141511 polypeptide=Lus10024110 locus=Lus10024110.g ID=Lus10024110.BGIv1.0 annot-version=v1.0 MERNKNHHYQSQGPPFPSSSSSSRNSTNISRFERSSATASTRRANPREVQESEWKPRRQSATNPNTLNEKPKGGVGEEGSSEHLTLTGTCPFMCPEGERA QRERLRDLAVFERLHGNPAKTSPSLAVKKFCRTISTMEGKESDLRPLPVLEETLTYLLTLFDSTNHSFEAVHDFIFDRTRSIRQDLSMQNIMNNKAIYMY EKMVKFHVISHLKLRHRSNSPTTSSTHYLNMEQLTKAITSLYNLYDVNRDNSNSVHKSEAEFRSLYVLLHIDSRNQPTGESLALWFRRISRSIIQSKQMC FARRVLRSFRLGNYRHFLSTIAAEASCLQYCILEPYITEVRAFSLSCINNVCYKLHPYPLDRLSNVLIMEEADVELLCKACGLETFTDDNGKKWLPTKQA TFTSPKDCQSFPVLGLEPFDI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	0	1
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	1.7	0.9263
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	3.0	0.9062
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	3.5	0.9068
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10005198 [exp]	5.0	0.8997
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	7.4	0.8878
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	7.5	0.8955
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10021363 [exp]	7.7	0.8517
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	7.7	0.8977
AT3G62140			unknown protein		Lus10038035 [exp]	8.8	0.8961
AT5G66600			Protein of unknown function, D...		Lus10016786 [exp]	9.9	0.8630

Compare expression of checked genes

Lus10024110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.