Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56790 295 / 3e-90 Protein kinase superfamily protein (.1) AT1G55200 292 / 8e-89 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G13690 280 / 1e-83 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G24540 246 / 4e-73 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G38560 248 / 3e-72 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G52290 240 / 3e-71 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G23540 243 / 5e-70 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT3G24550 239 / 2e-69 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT4G32710 231 / 3e-69 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT1G70460 239 / 4e-69 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041608 [exp] 1234 / 0 AT1G55200 318 / 4e-98 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10036100 [exp] 373 / 8e-120 AT1G55200 201 / 1e-55 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 296 / 3e-91 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006148 [exp] 292 / 3e-88 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 284 / 5e-86 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 288 / 8e-86 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011098 [exp] 248 / 2e-72 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 245 / 3e-71 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10022129 [exp] 243 / 1e-70 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G189850 [exp] 707 / 0 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.001G035900 [exp] 696 / 0 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.001G224800 [exp] 467 / 9e-157 AT5G56790 249 / 1e-73 Protein kinase superfamily protein (.1) Potri.001G200000 [exp] 292 / 1e-88 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G034900 [exp] 286 / 4e-86 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 274 / 6e-82 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G183000 [exp] 248 / 3e-73 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.018G081300 [exp] 246 / 1e-71 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 244 / 2e-71 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 240 / 2e-70 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10024111 pacid=23141603 polypeptide=Lus10024111 locus=Lus10024111.g ID=Lus10024111.BGIv1.0 annot-version=v1.0 ATGTCTGTGGGGGGAAGGCAAAGAGTGGTTATCATCCAGGATGCATCCAGGGATGTTAATCCAGGAACAATCAGATTGATCCTTCAGCAATTCTCTTTGA AGGCGGCTGACGTCTTGATCCTCTATGGAGCTCTTCACCAAGTTACTAATCCCATGGGATACAAGATCAAGGTGGACTCGAGCTCAGTGTTTGGGTTAAA CCCGAAGCTGGTTGCTGATGAAGTTTCAAGGAAGAAACTTGACTACTCTAATAATGAGGAAATCATCACAATTTCCAAGCTTTGTCAGCTGGAACAGATT GAGTTTCGTATAGAGGTGCATGTCGGACCAACTCCCAAGGTGATTGCTATGAAAGCTGCAAAAACTTTAAAGCCGACATGGCTCATACTTGATAGGCAAA TGAAGAAAGACCAAGCTTACTTCACTGAGAAGCTTTCATGCGGAATATCAAGAATAAAGCGCGATAACACCATCGAAGAATTGAGACAGCCGAAACAAAA AATGGCACCTAAACCGAAAGCTGCAGAAAAGGCAAGCGAGGACAACACTAGATCAGGGCAAGTGAAGTACGATGAAATGATACCAGGAAGTCCAGAGAAT GGAAAAGAAGAAGAAGGTCGATATCGAGGCCACAAGAAGTCTGTTCTTGGTATGTCATCAATAGACGAACCATTCACCCCACCTGTAACATCAACTACAG CTCGTCTTTTCTACGAGTCTTCATGTTCTGGTACTAATGGACCAATGAGAGTCTCCGCAGATCCTGAAGAGGAGGAGAAGTCCACCCTTGCTGAAAGAGA AGCAGCAAATAATGCTAAGCCACCAGTGTCACCGAGTGAAATCCAAGAGGAAGTAGTTACAGAAGACAGCAGTCCTAAAGCGGAGAAGCCCTTTAGGAAC TCCATTTGCTCAATCTGCAACAATGAGAGGCCAAAGACAGAATGGAAGAGAGACTTCACTTACTCTGAGCTACATTCCGCTACTGAAGGATTTTCGGTGA AGAATTTCTTGTCAGAAGGAGGGTTTGGCTCTGTCTACAAAGGGGATATCAATGGGATGAAGGTTGCTGTGAAGCAACACAAGAGTGCCAGCCTACAGGG GGAGAAAGAATTCAAATCAGAAGTTATGGTGCTGAAGAGAGTAAGACATGAGAATTTAGTGACATTGTTAGGTTCGTGTGCTGAAGGAAGCCATAGATTG CTTGTGTATGAGTATGTCTGCAATGGTTCTCTGGATCAACACCTATCACAACACACCCGAAAGCCTCTCAGTTGGGATATGAGAATGAAGATAGCCATTG GAGCTGCAAAAGGGTTACAGTATTTGCATGAAAACAACATTATCCACAGAGATACGAGACCAAGCAACATCCTCATAACCCATGATTATGAGGCAATGCT AGGGGATTTTGGCCTGGCAAGAACACAGCAAGAAGATCAAGAACTGTCAACGGAGACAAATGTGGTAGGAACATTGGGATACTTGGCACCAGAATATGCA GAATATGGGAAAGTATCAACCAAGACAGATGTGTACTCATTTGGGATAGTGCTGTTACAACTGATCACTGGACTCAAAACCACAGACAAGAAACTTGGAG GGAAAAGTCTAGTGGGATGGGCAAGACCACTACTGAAAGATAAGAATTACCCAGACTTGATTGACCAGAGGATCTTGGATACCCACGATGTGCATCAGCT ATTCTGGATGGTGAGAGTAGCAGAGAAGTGCCTGAGCAAGGACCCTAAGAAAAGATTATCCATGGAAAAGGCAAACAATAACAAAAACAAATGTGGGCAA AAAGGGCAGGTGGTTTGTGCATTGGATCACATCATAGAAAGCGAGACGGGGTGCAACAGCATAAAAGAGTACTCCCCAGTACCTTCGGATACGATAAGCA GCACCCGAGGTTCCAGTGAAGATGATTACACTGGGGAATCCAGTGTTTCAACTAGCGGAACCAGCAGCGTAGCAAGTTTGCCACTTTTCCTTCCACCATT ATTGCAGTCCTCTATGACTATCAGGAATCCACCAACTCCGCCAATGGAAACCACTTCCGCAGCAGCTCCAGCGCAACAACAATATGAGAGTTGGTATGAA ATATGA
AA sequence Show only first row Show all	>Lus10024111 pacid=23141603 polypeptide=Lus10024111 locus=Lus10024111.g ID=Lus10024111.BGIv1.0 annot-version=v1.0 MSVGGRQRVVIIQDASRDVNPGTIRLILQQFSLKAADVLILYGALHQVTNPMGYKIKVDSSSVFGLNPKLVADEVSRKKLDYSNNEEIITISKLCQLEQI EFRIEVHVGPTPKVIAMKAAKTLKPTWLILDRQMKKDQAYFTEKLSCGISRIKRDNTIEELRQPKQKMAPKPKAAEKASEDNTRSGQVKYDEMIPGSPEN GKEEEGRYRGHKKSVLGMSSIDEPFTPPVTSTTARLFYESSCSGTNGPMRVSADPEEEEKSTLAEREAANNAKPPVSPSEIQEEVVTEDSSPKAEKPFRN SICSICNNERPKTEWKRDFTYSELHSATEGFSVKNFLSEGGFGSVYKGDINGMKVAVKQHKSASLQGEKEFKSEVMVLKRVRHENLVTLLGSCAEGSHRL LVYEYVCNGSLDQHLSQHTRKPLSWDMRMKIAIGAAKGLQYLHENNIIHRDTRPSNILITHDYEAMLGDFGLARTQQEDQELSTETNVVGTLGYLAPEYA EYGKVSTKTDVYSFGIVLLQLITGLKTTDKKLGGKSLVGWARPLLKDKNYPDLIDQRILDTHDVHQLFWMVRVAEKCLSKDPKKRLSMEKANNNKNKCGQ KGQVVCALDHIIESETGCNSIKEYSPVPSDTISSTRGSSEDDYTGESSVSTSGTSSVASLPLFLPPLLQSSMTIRNPPTPPMETTSAAAPAQQQYESWYE I

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56790			Protein kinase superfamily pro...		Lus10024111 [exp]	0	1
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	6.0	0.7873
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	8.1	0.8075
AT1G66510			AAR2 protein family (.1.2.3)		Lus10028528 [exp]	9.7	0.7652
AT3G46750			unknown protein		Lus10004979 [exp]	10.7	0.7148
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	13.9	0.7670
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	15.5	0.7522
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10034734 [exp]	16.4	0.7597
AT1G78090		ATTPPB	Arabidopsis thaliana trehalose...		Lus10039339 [exp]	22.9	0.7405
AT2G23090			Uncharacterised protein family...		Lus10019287 [exp]	23.2	0.7461
AT1G71390		AtRLP11	receptor like protein 11 (.1)		Lus10016401 [exp]	25.1	0.7344

Compare expression of checked genes

Lus10024111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.