Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65580 733 / 0 FRA3 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) AT1G05630 670 / 0 AT5PTASE13, 5PTASE13 Endonuclease/exonuclease/phosphatase family protein (.1.2) AT2G43900 642 / 0 Endonuclease/exonuclease/phosphatase family protein (.1) AT2G31830 568 / 0 endonuclease/exonuclease/phosphatase family protein (.1.2) AT3G63240 124 / 3e-30 DNAse I-like superfamily protein (.1) AT1G34120 124 / 6e-30 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT4G18010 119 / 2e-28 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G71710 119 / 2e-28 DNAse I-like superfamily protein (.1.2) AT2G01900 97 / 2e-21 DNAse I-like superfamily protein (.1) AT2G37440 94 / 2e-20 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041607 [exp] 1087 / 0 AT1G65580 1398 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10008330 [exp] 609 / 0 AT2G43900 1477 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10027073 [exp] 606 / 0 AT2G43900 1455 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10011041 [exp] 132 / 2e-32 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10003010 [exp] 127 / 8e-31 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10039352 [exp] 112 / 5e-26 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10040107 [exp] 100 / 1e-21 AT4G18010 638 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10006597 [exp] 92 / 7e-20 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10028697 [exp] 93 / 2e-19 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G177400 [exp] 877 / 0 AT1G65580 1490 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.008G079300 [exp] 801 / 0 AT1G65580 1475 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.017G006900 [exp] 688 / 0 AT1G05630 1508 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.007G145100 [exp] 652 / 0 AT2G43900 1511 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Potri.015G032200 [exp] 129 / 3e-32 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.017G074200 [exp] 113 / 1e-26 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2) Potri.001G145900 [exp] 100 / 3e-22 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.003G088300 [exp] 100 / 7e-22 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.007G090200 [exp] 94 / 4e-20 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.005G078000 [exp] 93 / 8e-20 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10024112 pacid=23141535 polypeptide=Lus10024112 locus=Lus10024112.g ID=Lus10024112.BGIv1.0 annot-version=v1.0 ATGCCATACTTGCTCAAGCTCTATGTTGGACTCGAAGGTAGCACTCTCGGGCAGTGGTGGCTAGATATGATAGGCAAAACATTGGATGAAGGGTCAACAT TCGAGCGTGTTGGTTCTCGGCAGCTAGCAGGGTTGCTCATCTCTATATGGGTTAGGAGTAATTTAAAACCCCATGTTGGTGATGTTGATGCTGCTGCTGT CCCATGTGGATTTGGGCGTGCAATTGGTAACAAGGGAGCTGTTGGTTTGAGGATCAGAGTTTTTGATCGGATAATATGTTTCATTAATTGTCACTTTGCG GCACATTTAGAAGCAGTTGGGCGACGCAATGATGACTTTGATCATGTTTATCGAACCATGTCATTTGGACGATCATCAAACCACTTCGCTGGTGCGGCTG GTATGGTGCCGTTCCTGCTCTTCTCTTGCACGCTTGCCTGCTCAATGTGTTTATTTTGGCTTGTTTATAGATCTGGATTGCTATTCCTCCTTTCTGTTGC AGTTGGGACTTCATCTGCTGGTCAAATGCTTCGTGGTACAACCGTTTTCAATGGAAGCTCGGCAGATACAATTCCAGAGCTATCTGAGGCAGATATGGTC GTATTTCTTGGTGACTTTAATTATCGGTTGGATAATATTTCCTATGATGAAGCAAGGGATTTTATTTCTCAAAGATGCTTTGATTGGCTTAAAGAAAGGG ATCAACTACACTCAGAAATGAAAGCTGGGAATGTTTTCCAAGGAATGCGTGAAGCAGTCATTAGATTTCCTCCTACATACAAGTTTGAAAAGCACCAGCA TGGTTTAGCAGGATACGATTCTGGTGAAAAGAAGCGCATTCCAGCCTGGTGTGACCGAATACTGTACCGTGACAGCCGGTCAGCAGGGGTGTCTGAGTGC AGCTTACAGTGCCCTGTTGTAGGTTTGATTTCGCAGTACGATGCTTGCATGGATGTGACCGACAGTGATCACAAGCCTGTACGTTGCGTCTTTAGTGTCG ATATTGCGAAAGTGGATGAGTCCGTAAGAAGACAAGAACTTGGAGACATTATGAAATCAAGTGTGGAAATCAGATCCATACTAAAAGAGCAATGCAAGAT TCCGGAAACTATTGTTAGCACAAATAACATAATCCTGCAAAACCTGGACAGAACTATTTTACGGATGACAAATAAATCAGATCAATTTGATGCTCTGTAT CAAATTGTCTGCGAGGGCGAGTCAACTGTTGATGAGGATGGACAAGCTGGCGATCATCATCCAAGGGGTTCCTTTGGGTTTCCTCAATGGCTTCAGGTAA TTCCTGCGGCAGGCGTGATTAAACCGGGAAACATTGCAGAGGTTGGGGTCCACCACGAGGATTTCTCAACGATAGAGGAGTTTGTGGACGGTGTCCCGCT GAACTCCTGGTGTGAAGACATCAGAGACAAGGAAGTTATATTGGTCGTGAAAGTACGAGGCACTTACAACACGACCGAGACAAGAAATCATAGGATTCGT GTGCGCCATTGTCGTTCGTCACGAGTTGATCCAAATGTCGATAGCGATAAGTCGCAGGGGAGTCTTCTCCACCGGGCTGATTACCAAAACCTTAGCAGTT CGTACGATGTGGTGAACCGCCTTCGGAAGTTGAATAGTCCGTAG
AA sequence Show only first row Show all	>Lus10024112 pacid=23141535 polypeptide=Lus10024112 locus=Lus10024112.g ID=Lus10024112.BGIv1.0 annot-version=v1.0 MPYLLKLYVGLEGSTLGQWWLDMIGKTLDEGSTFERVGSRQLAGLLISIWVRSNLKPHVGDVDAAAVPCGFGRAIGNKGAVGLRIRVFDRIICFINCHFA AHLEAVGRRNDDFDHVYRTMSFGRSSNHFAGAAGMVPFLLFSCTLACSMCLFWLVYRSGLLFLLSVAVGTSSAGQMLRGTTVFNGSSADTIPELSEADMV VFLGDFNYRLDNISYDEARDFISQRCFDWLKERDQLHSEMKAGNVFQGMREAVIRFPPTYKFEKHQHGLAGYDSGEKKRIPAWCDRILYRDSRSAGVSEC SLQCPVVGLISQYDACMDVTDSDHKPVRCVFSVDIAKVDESVRRQELGDIMKSSVEIRSILKEQCKIPETIVSTNNIILQNLDRTILRMTNKSDQFDALY QIVCEGESTVDEDGQAGDHHPRGSFGFPQWLQVIPAAGVIKPGNIAEVGVHHEDFSTIEEFVDGVPLNSWCEDIRDKEVILVVKVRGTYNTTETRNHRIR VRHCRSSRVDPNVDSDKSQGSLLHRADYQNLSSSYDVVNRLRKLNSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024112 [exp]	0	1
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	2.4	0.8883
AT3G14460			LRR and NB-ARC domains-contain...		Lus10026132 [exp]	5.5	0.8373
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10023696 [exp]	7.1	0.8431
AT4G32272			Nucleotide/sugar transporter f...		Lus10006645 [exp]	7.3	0.8564
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	9.9	0.8487
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	10.2	0.8486
AT5G15640			Mitochondrial substrate carrie...		Lus10012597 [exp]	10.7	0.8205
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10000158 [exp]	17.5	0.7927
AT5G17570			TatD related DNase (.1)		Lus10017234 [exp]	18.0	0.8034
AT1G07480			Transcription factor IIA, alph...		Lus10001563 [exp]	18.4	0.8331

Compare expression of checked genes

Lus10024112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.